PLAZA 3.0 Monocots : Functional Clustering

Functional clusters

Information

Type: Mapman term
Identifier: 34.13
Description: transport.peptides and oligopeptides

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis thaliana	1	17	CH_ath_111	5	5	0.000000000661732
Arabidopsis thaliana	1	17	CH_ath_389	3	4	0.000842965
Arabidopsis thaliana	3	17	CH_ath_69	7	9	0.0000000000000695633
Arabidopsis thaliana	3	19	CH_ath_54	5	9	0.0000000181182
Brachypodium distachyon	Bd1	17	CH_bdi_71	5	5	0.0000000310855
Brachypodium distachyon	Bd2	17	CH_bdi_48	6	6	0.000000000124253
Brachypodium distachyon	Bd5	17	CH_bdi_147	4	4	0.00000770455
Brachypodium distachyon	Bd5	19	CH_bdi_18	3	3	0.000727735
Oryza sativa ssp. japonica	1	17	CH_osa_22	9	10	4.70201e-19
Oryza sativa ssp. japonica	10	17	CH_osa_106	7	25	0.00000000520341
Oryza sativa ssp. japonica	4	17	CH_osa_402	3	3	0.000568919
Oryza sativa ssp. japonica	4	17	CH_osa_401	3	3	0.000568919
Oryza sativa ssp. japonica	5	17	CH_osa_311	4	8	0.0000843522
Oryza sativa ssp. japonica	6	17	CH_osa_101	5	5	0.00000000256587
Oryza sativa ssp. japonica	1	19	CH_osa_5	5	8	0.0000000421954
Oryza sativa ssp. japonica	4	19	CH_osa_33	3	3	0.000275326
Populus trichocarpa	Chr13	17	CH_ptr_84	7	8	0.000000000000549027
Populus trichocarpa	Chr17	17	CH_ptr_85	8	14	0.000000000000569765
Populus trichocarpa	Chr18	17	CH_ptr_25	12	16	1.94723e-23
Populus trichocarpa	Chr17	18	CH_ptr_73	10	74	0.000000000899113
Populus trichocarpa	Chr18	18	CH_ptr_24	12	16	1.94723e-23
Setaria italica	scaffold_1	17	CH_sit_380	5	19	0.000255055
Setaria italica	scaffold_1	17	CH_sit_238	4	4	0.00000636678
Setaria italica	scaffold_3	17	CH_sit_153	6	12	0.0000000739798
Setaria italica	scaffold_3	17	CH_sit_59	7	7	0.000000000000288417
Setaria italica	scaffold_5	17	CH_sit_41	8	8	0.0000000000000010119
Setaria italica	scaffold_7	17	CH_sit_139	5	5	0.0000000228762
Setaria italica	scaffold_9	17	CH_sit_87	7	11	0.0000000000940034
Setaria italica	scaffold_9	17	CH_sit_124	6	9	0.00000000678754
Setaria italica	scaffold_9	18	CH_sit_69	10	170	0.0000311752
Setaria italica	scaffold_3	19	CH_sit_11	4	6	0.0000164425
Solanum lycopersicum	ch03	17	CH_sly_294	4	5	0.0000219318
Solanum lycopersicum	ch05	17	CH_sly_20	10	11	5.28643e-20
Solanum lycopersicum	ch06	17	CH_sly_97	6	7	0.000000000328004
Solanum lycopersicum	ch12	17	CH_sly_54	7	7	0.000000000000151569
Solanum lycopersicum	ch05	18	CH_sly_19	10	11	5.28643e-20
Solanum lycopersicum	ch03	19	CH_sly_14	4	5	0.0000116736
Solanum lycopersicum	ch05	19	CH_sly_6	5	9	0.00000081597
Solanum lycopersicum	ch06	19	CH_sly_2	6	7	0.000000000126206
Solanum lycopersicum	ch11	19	CH_sly_40	3	3	0.000829153
Solanum lycopersicum	ch12	19	CH_sly_1	6	6	0.0000000000180723
Vitis vinifera	chr1	17	CH_vvi_425	3	3	0.000686303
Vitis vinifera	chr17	17	CH_vvi_387	4	10	0.00041084
Vitis vinifera	chr18	17	CH_vvi_426	3	3	0.000686303
Vitis vinifera	chr18	17	CH_vvi_27	11	13	1.77564e-22
Vitis vinifera	chr19	17	CH_vvi_154	5	6	0.0000000338746
Vitis vinifera	chr18	18	CH_vvi_29	11	13	1.77564e-22
Vitis vinifera	chr17	19	CH_vvi_30	3	3	0.000227686
Zea mays	1	17	CH_zma_40	5	5	0.00000000587102
Zea mays	10	17	CH_zma_224	3	3	0.000727745
Zea mays	3	17	CH_zma_223	3	3	0.000727745
Zea mays	6	17	CH_zma_41	5	5	0.00000000587102
Zea mays	1	19	CH_zma_15	3	3	0.000356377
Zea mays	6	19	CH_zma_16	3	3	0.000356377

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V