PLAZA 3.0 Monocots : Functional Clustering

Functional clusters

Information

Type: Mapman term
Identifier: 33.1
Description: development.storage proteins

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis thaliana	4	17	CH_ath_137	4	4	0.0000000129532
Arabidopsis thaliana	4	17	CH_ath_257	3	3	0.0000174092
Brachypodium distachyon	Bd2	17	CH_bdi_184	3	3	0.0000510404
Brachypodium distachyon	Bd3	17	CH_bdi_171	5	36	0.0000247048
Brachypodium distachyon	Bd4	17	CH_bdi_185	3	3	0.0000510404
Oryza sativa ssp. japonica	1	17	CH_osa_428	3	6	0.000891197
Oryza sativa ssp. japonica	2	17	CH_osa_120	5	12	0.0000000106021
Oryza sativa ssp. japonica	8	17	CH_osa_375	3	5	0.000254918
Oryza sativa ssp. japonica	9	17	CH_osa_276	3	3	0.0000255208
Populus trichocarpa	Chr14	17	CH_ptr_46	8	11	1.18895e-16
Populus trichocarpa	Chr17	17	CH_ptr_124	5	5	0.00000000027849
Populus trichocarpa	Chr19	17	CH_ptr_211	4	4	0.00000019549
Populus trichocarpa	Chr19	17	CH_ptr_170	5	8	0.0000000155398
Populus trichocarpa	scaffold_48	17	CH_ptr_83	7	12	0.00000000000042181
Setaria italica	scaffold_6	17	CH_sit_141	4	4	0.0000000252005
Setaria italica	scaffold_8	17	CH_sit_176	4	6	0.000000377474
Setaria italica	scaffold_9	17	CH_sit_336	3	4	0.000114858
Solanum lycopersicum	ch04	17	CH_sly_53	6	6	0.000000000000133571
Solanum lycopersicum	ch06	17	CH_sly_62	6	7	0.000000000000934049
Solanum lycopersicum	ch09	17	CH_sly_170	4	4	0.0000000935249
Vitis vinifera	chr12	17	CH_vvi_95	7	16	0.0000000000046588
Vitis vinifera	chr18	17	CH_vvi_16	13	17	3.45684e-30
Vitis vinifera	chr7	17	CH_vvi_324	3	3	0.0000996314
Vitis vinifera	chr7	17	CH_vvi_224	4	6	0.00000221152
Vitis vinifera	chr7	17	CH_vvi_325	3	3	0.0000996314
Vitis vinifera	chrUn	17	CH_vvi_323	3	3	0.0000996314
Vitis vinifera	chr18	18	CH_vvi_17	13	17	3.45684e-30
Zea mays	1	17	CH_zma_52	4	4	0.0000000352149
Zea mays	2	17	CH_zma_51	4	4	0.0000000352149

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V