PLAZA 3.0 Monocots : Functional Clustering

Functional clusters

Information

Type: Mapman term
Identifier: 31.1
Description: cell.organisation

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis thaliana	2	17	CH_ath_77	10	13	0.000000000000566216
Arabidopsis thaliana	4	17	CH_ath_103	9	13	0.000000000118233
Arabidopsis thaliana	5	17	CH_ath_322	6	13	0.000163295
Arabidopsis thaliana	2	18	CH_ath_39	10	13	0.000000000000566216
Arabidopsis thaliana	4	18	CH_ath_52	10	27	0.0000000143532
Brachypodium distachyon	Bd1	17	CH_bdi_143	6	8	0.00000530272
Brachypodium distachyon	Bd2	17	CH_bdi_225	5	7	0.00028755
Brachypodium distachyon	Bd1	18	CH_bdi_50	11	86	0.000901002
Oryza sativa ssp. japonica	2	17	CH_osa_123	8	17	0.0000000127949
Oryza sativa ssp. japonica	3	17	CH_osa_308	5	8	0.0000740865
Populus trichocarpa	Chr08	17	CH_ptr_348	6	9	0.0000527594
Populus trichocarpa	Chr11	17	CH_ptr_23	23	51	1.71629e-23
Populus trichocarpa	Chr19	17	CH_ptr_114	12	26	0.0000000000796627
Populus trichocarpa	Chr19	17	CH_ptr_347	6	9	0.0000527594
Populus trichocarpa	Chr11	18	CH_ptr_22	23	51	1.71629e-23
Populus trichocarpa	Chr19	18	CH_ptr_67	12	26	0.0000000000796627
Setaria italica	scaffold_1	17	CH_sit_414	6	16	0.000489827
Setaria italica	scaffold_2	17	CH_sit_416	4	4	0.000548386
Setaria italica	scaffold_3	17	CH_sit_417	4	4	0.000548386
Setaria italica	scaffold_3	17	CH_sit_86	8	9	0.0000000000728194
Setaria italica	scaffold_4	17	CH_sit_108	12	44	0.00000000178419
Setaria italica	scaffold_3	18	CH_sit_64	10	51	0.00000833135
Setaria italica	scaffold_4	18	CH_sit_45	12	44	0.00000000178419
Solanum lycopersicum	ch01	17	CH_sly_426	9	44	0.000409712
Vitis vinifera	chr12	17	CH_vvi_50	15	24	7.24174e-17
Vitis vinifera	chr13	17	CH_vvi_337	6	10	0.000124934
Vitis vinifera	chr14	17	CH_vvi_242	6	7	0.00000435065
Vitis vinifera	chr5	17	CH_vvi_77	14	29	0.00000000000023641
Vitis vinifera	chr9	17	CH_vvi_123	8	9	0.00000000158411
Vitis vinifera	chrUn	17	CH_vvi_275	6	8	0.0000171507
Vitis vinifera	chrUn	17	CH_vvi_153	9	16	0.0000000308292
Vitis vinifera	chr12	18	CH_vvi_38	15	24	7.24174e-17
Vitis vinifera	chr5	18	CH_vvi_47	14	29	0.00000000000023641
Vitis vinifera	chr9	18	CH_vvi_101	10	47	0.000147449
Vitis vinifera	chrUn	18	CH_vvi_99	15	125	0.00010372
Zea mays	1	17	CH_zma_225	4	5	0.000760582
Zea mays	5	17	CH_zma_165	5	7	0.000197588

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V