PLAZA 3.0 Monocots : Functional Clustering

Functional clusters

Information

Type: Mapman term
Identifier: 29.5.11.4.3.2
Description: protein.degradation.ubiquitin.E3.SCF.FBOX

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis thaliana	1	17	CH_ath_371	9	30	0.000438202
Arabidopsis thaliana	1	17	CH_ath_299	9	25	0.0000692056
Arabidopsis thaliana	2	17	CH_ath_193	9	17	0.000000967744
Arabidopsis thaliana	3	17	CH_ath_159	13	40	0.0000000776117
Arabidopsis thaliana	3	17	CH_ath_37	21	48	7.7836e-18
Arabidopsis thaliana	4	17	CH_ath_313	6	8	0.000114212
Arabidopsis thaliana	4	17	CH_ath_226	6	6	0.00000423971
Arabidopsis thaliana	5	17	CH_ath_298	7	12	0.0000678392
Arabidopsis thaliana	5	17	CH_ath_110	9	10	0.00000000045856
Arabidopsis thaliana	1	18	CH_ath_81	12	54	0.0000736472
Arabidopsis thaliana	1	18	CH_ath_86	15	103	0.00035872
Arabidopsis thaliana	2	18	CH_ath_73	11	38	0.0000159387
Arabidopsis thaliana	3	18	CH_ath_31	21	48	7.7836e-18
Arabidopsis thaliana	3	18	CH_ath_98	20	199	0.00094616
Arabidopsis thaliana	3	18	CH_ath_58	13	40	0.0000000776117
Arabidopsis thaliana	4	18	CH_ath_71	10	28	0.00000945015
Arabidopsis thaliana	5	18	CH_ath_60	14	52	0.000000200064
Arabidopsis thaliana	5	18	CH_ath_95	17	142	0.000783042
Brachypodium distachyon	Bd1	17	CH_bdi_204	8	25	0.000106316
Brachypodium distachyon	Bd1	17	CH_bdi_58	8	9	0.00000000111336
Brachypodium distachyon	Bd2	17	CH_bdi_154	10	38	0.0000100951
Brachypodium distachyon	Bd2	17	CH_bdi_114	9	23	0.00000134134
Brachypodium distachyon	Bd3	17	CH_bdi_22	16	40	0.0000000000000224823
Brachypodium distachyon	Bd4	17	CH_bdi_144	7	12	0.00000576327
Brachypodium distachyon	Bd4	17	CH_bdi_36	10	13	0.00000000000880399
Brachypodium distachyon	Bd4	17	CH_bdi_201	10	47	0.0000969563
Brachypodium distachyon	Bd5	17	CH_bdi_65	7	7	0.00000000781189
Brachypodium distachyon	Bd1	18	CH_bdi_29	15	103	0.00000356905
Brachypodium distachyon	Bd2	18	CH_bdi_33	10	38	0.0000100951
Brachypodium distachyon	Bd2	18	CH_bdi_38	11	53	0.0000210842
Brachypodium distachyon	Bd3	18	CH_bdi_13	16	40	0.0000000000000224823
Brachypodium distachyon	Bd4	18	CH_bdi_17	10	13	0.00000000000880399
Brachypodium distachyon	Bd4	18	CH_bdi_43	10	47	0.0000969563
Oryza sativa ssp. japonica	10	17	CH_osa_220	6	21	0.00000322032
Oryza sativa ssp. japonica	4	17	CH_osa_304	5	15	0.0000569848
Oryza sativa ssp. japonica	8	17	CH_osa_89	7	14	0.000000000656425
Oryza sativa ssp. japonica	8	17	CH_osa_50	11	48	0.000000000000377804
Oryza sativa ssp. japonica	8	18	CH_osa_64	10	121	0.000000546998
Oryza sativa ssp. japonica	8	18	CH_osa_36	11	48	0.000000000000377804
Populus trichocarpa	Chr04	17	CH_ptr_36	12	16	6.16036e-18
Populus trichocarpa	Chr05	17	CH_ptr_490	4	5	0.000925
Populus trichocarpa	Chr06	17	CH_ptr_282	7	19	0.0000047009
Populus trichocarpa	Chr04	18	CH_ptr_32	12	16	6.16036e-18
Setaria italica	scaffold_2	17	CH_sit_269	5	5	0.0000156527
Setaria italica	scaffold_2	17	CH_sit_79	13	36	0.0000000000264286
Setaria italica	scaffold_2	17	CH_sit_13	20	34	1.15983e-24
Setaria italica	scaffold_2	17	CH_sit_157	7	9	0.000000098365
Setaria italica	scaffold_5	17	CH_sit_116	10	22	0.00000000367782
Setaria italica	scaffold_6	17	CH_sit_45	15	34	0.00000000000000384805
Setaria italica	scaffold_7	17	CH_sit_80	9	11	0.000000000026618
Setaria italica	scaffold_7	17	CH_sit_199	6	7	0.00000144947
Setaria italica	scaffold_9	17	CH_sit_232	6	8	0.00000573136
Setaria italica	scaffold_2	18	CH_sit_70	10	49	0.0000336976
Setaria italica	scaffold_2	18	CH_sit_12	33	127	2.44434e-28
Setaria italica	scaffold_2	18	CH_sit_56	10	36	0.00000122002
Setaria italica	scaffold_5	18	CH_sit_47	10	22	0.00000000367782
Setaria italica	scaffold_6	18	CH_sit_34	15	34	0.00000000000000384805
Solanum lycopersicum	ch05	17	CH_sly_460	4	5	0.000693441
Solanum lycopersicum	ch08	17	CH_sly_260	5	6	0.00000656458
Solanum lycopersicum	ch08	17	CH_sly_101	7	8	0.000000000538932
Solanum lycopersicum	ch08	18	CH_sly_90	10	97	0.000217045
Zea mays	2	17	CH_zma_98	8	41	0.00000378472
Zea mays	7	17	CH_zma_18	7	7	0.00000000000803842
Zea mays	2	18	CH_zma_24	10	87	0.00000422243

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V