PLAZA 3.0 Monocots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis thaliana	2	17	CH_ath_279	3	4	0.0000430019
Arabidopsis thaliana	3	17	CH_ath_127	4	4	0.0000000067224
Oryza sativa ssp. japonica	7	17	CH_osa_310	3	5	0.0000781754
Oryza sativa ssp. japonica	7	17	CH_osa_30	7	10	4.07491e-17
Oryza sativa ssp. japonica	8	17	CH_osa_341	3	6	0.000156291
Oryza sativa ssp. japonica	9	17	CH_osa_86	6	29	0.000000000372103
Solanum lycopersicum	ch10	17	CH_sly_134	4	5	0.0000000111029
Solanum lycopersicum	ch11	17	CH_sly_269	4	20	0.0000106985
Vitis vinifera	chr3	17	CH_vvi_202	3	3	0.00000072901
Zea mays	2	17	CH_zma_26	5	10	0.000000000185237

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V