Functional clusters
Information
- Type
- Mapman term
- Identifier
- 29.5.11.4.2
- Description
- protein.degradation.ubiquitin.E3.RING
Cluster overview
Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
---|---|---|---|---|---|---|
Arabidopsis thaliana | 3 | 17 | CH_ath_162 | 9 | 20 | 0.0000000916875 |
Brachypodium distachyon | Bd1 | 17 | CH_bdi_136 | 6 | 7 | 0.00000400178 |
Brachypodium distachyon | Bd2 | 17 | CH_bdi_180 | 5 | 5 | 0.0000348748 |
Chlamydomonas reinhardtii | chromosome_10 | 17 | CH_cre_41 | 4 | 7 | 0.000103786 |
Oryza sativa ssp. japonica | 1 | 17 | CH_osa_339 | 5 | 9 | 0.000138236 |
Oryza sativa ssp. japonica | 4 | 17 | CH_osa_421 | 4 | 5 | 0.00077357 |
Setaria italica | scaffold_1 | 17 | CH_sit_115 | 10 | 22 | 0.0000000027954 |
Setaria italica | scaffold_4 | 17 | CH_sit_30 | 14 | 20 | 4.87142e-18 |
Setaria italica | scaffold_7 | 17 | CH_sit_329 | 5 | 6 | 0.0000808841 |
Setaria italica | scaffold_1 | 18 | CH_sit_46 | 10 | 22 | 0.0000000027954 |
Setaria italica | scaffold_4 | 18 | CH_sit_26 | 14 | 20 | 4.87142e-18 |
Solanum lycopersicum | ch01 | 17 | CH_sly_181 | 6 | 6 | 0.000000174572 |
Solanum lycopersicum | ch09 | 17 | CH_sly_165 | 7 | 9 | 0.0000000797842 |
Solanum lycopersicum | ch11 | 17 | CH_sly_276 | 5 | 5 | 0.0000134107 |
Vitis vinifera | chr7 | 17 | CH_vvi_340 | 5 | 7 | 0.000127368 |
Zea mays | 5 | 17 | CH_zma_67 | 6 | 6 | 0.000000163747 |
Functional clusters experiments
Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
---|---|---|---|---|---|---|---|
1 | GO | Primary GO data only. | 2 | 30 | 80 | 0.001 | X |
2 | GO | Primary and orthology projected GO data. | 2 | 30 | 80 | 0.001 | X |
3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | X |
4 | GO | Primary GO data only. | 10 | 150 | 300 | 0.001 | X |
5 | GO | Primary and orthology projected GO data. | 10 | 150 | 300 | 0.001 | X |
6 | GO | All GO data. | 10 | 150 | 300 | 0.001 | X |
7 | GO | Primary GO data only. | 2 | 30 | 80 | 0.001 | V |
8 | GO | Primary and orthology projected GO data. | 2 | 30 | 80 | 0.001 | V |
9 | GO | All GO data. | 2 | 30 | 80 | 0.001 | V |
10 | GO | Primary GO data only. | 10 | 150 | 300 | 0.001 | V |
11 | GO | Primary and orthology projected GO data. | 10 | 150 | 300 | 0.001 | V |
12 | GO | All GO data. | 10 | 150 | 300 | 0.001 | V |
13 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | X |
14 | InterPro | No filter applied. | 10 | 150 | 300 | 0.001 | X |
15 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | V |
16 | InterPro | No filter applied. | 10 | 150 | 300 | 0.001 | V |
17 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | X |
18 | MapMan | No filter applied. | 10 | 150 | 300 | 0.001 | X |
19 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | V |
20 | MapMan | No filter applied. | 10 | 150 | 300 | 0.001 | V |