PLAZA 3.0 Monocots : Functional Clustering

Functional clusters

Information

Type: Mapman term
Identifier: 29.5.1
Description: protein.degradation.subtilases

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis thaliana	1	17	CH_ath_123	5	6	0.00000000236206
Arabidopsis thaliana	4	17	CH_ath_318	3	3	0.000155492
Arabidopsis thaliana	4	17	CH_ath_109	5	5	0.000000000394196
Arabidopsis thaliana	5	17	CH_ath_57	10	41	0.00000000000000309285
Arabidopsis thaliana	5	18	CH_ath_33	10	41	0.00000000000000309285
Brachypodium distachyon	Bd3	17	CH_bdi_106	4	4	0.000000717639
Brachypodium distachyon	Bd5	17	CH_bdi_107	4	4	0.000000717639
Chlamydomonas reinhardtii	chromosome_5	17	CH_cre_25	5	23	0.00000109621
Oryza sativa ssp. japonica	1	17	CH_osa_149	4	4	0.0000000822831
Oryza sativa ssp. japonica	2	17	CH_osa_161	5	14	0.000000172803
Oryza sativa ssp. japonica	2	17	CH_osa_117	6	23	0.00000000899197
Oryza sativa ssp. japonica	4	17	CH_osa_44	10	79	0.0000000000000876017
Oryza sativa ssp. japonica	4	18	CH_osa_33	10	79	0.0000000000000876017
Oryza sativa ssp. japonica	2	19	CH_osa_20	3	3	0.0000273437
Populus trichocarpa	Chr01	17	CH_ptr_428	3	3	0.000411212
Populus trichocarpa	Chr01	17	CH_ptr_235	4	4	0.000000873541
Populus trichocarpa	Chr07	17	CH_ptr_427	3	3	0.000411212
Populus trichocarpa	Chr10	17	CH_ptr_234	4	4	0.000000873541
Populus trichocarpa	Chr11	17	CH_ptr_233	4	4	0.000000873541
Populus trichocarpa	Chr14	17	CH_ptr_426	3	3	0.000411212
Setaria italica	scaffold_1	17	CH_sit_119	5	6	0.00000000480042
Setaria italica	scaffold_2	17	CH_sit_242	4	6	0.00000661842
Setaria italica	scaffold_2	17	CH_sit_213	4	5	0.0000022094
Setaria italica	scaffold_5	17	CH_sit_104	5	5	0.000000000801283
Setaria italica	scaffold_7	17	CH_sit_374	3	3	0.00024065
Solanum lycopersicum	ch01	17	CH_sly_18	10	12	5.06113e-20
Solanum lycopersicum	ch02	17	CH_sly_213	5	10	0.00000147051
Solanum lycopersicum	ch05	17	CH_sly_468	3	3	0.000780389
Solanum lycopersicum	ch08	17	CH_sly_34	9	11	1.627e-17
Solanum lycopersicum	ch08	17	CH_sly_3	17	18	7.90845e-39
Solanum lycopersicum	ch10	17	CH_sly_220	4	4	0.00000215745
Solanum lycopersicum	ch01	18	CH_sly_17	10	12	5.06113e-20
Solanum lycopersicum	ch08	18	CH_sly_76	10	188	0.00000602718
Solanum lycopersicum	ch08	18	CH_sly_3	17	18	7.90845e-39
Solanum lycopersicum	ch01	19	CH_sly_20	4	11	0.0000740572
Solanum lycopersicum	ch05	19	CH_sly_23	3	3	0.000145581
Solanum lycopersicum	ch10	19	CH_sly_24	3	3	0.000145581
Vitis vinifera	chr13	17	CH_vvi_23	13	15	7.16726e-27
Vitis vinifera	chr15	17	CH_vvi_127	6	9	0.00000000258762
Vitis vinifera	chr16	17	CH_vvi_177	6	15	0.000000151688
Vitis vinifera	chr18	17	CH_vvi_443	3	3	0.000952365
Vitis vinifera	chr2	17	CH_vvi_234	4	4	0.00000307892
Vitis vinifera	chr3	17	CH_vvi_442	3	3	0.000952365
Vitis vinifera	chr6	17	CH_vvi_233	4	4	0.00000307892
Vitis vinifera	chrUn	17	CH_vvi_165	5	6	0.0000000588656
Vitis vinifera	chr13	18	CH_vvi_24	13	15	7.16726e-27
Vitis vinifera	chr3	19	CH_vvi_28	3	3	0.000191799
Zea mays	7	17	CH_zma_154	3	3	0.000139377

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V