PLAZA 3.0 Monocots : Functional Clustering

Functional clusters

Type: Mapman term
Identifier: 29.4.1.57
Description: protein.postranslational modification.kinase.receptor like cytoplasmatic kinase VII

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Brachypodium distachyon	Bd4	17	CH_bdi_92	8	17	0.000000164333
Oryza sativa ssp. japonica	11	17	CH_osa_284	7	29	0.0000351357
Oryza sativa ssp. japonica	11	18	CH_osa_94	14	227	0.0000214153
Populus trichocarpa	Chr03	17	CH_ptr_356	5	6	0.0000753187
Populus trichocarpa	Chr04	17	CH_ptr_175	9	19	0.0000000254362
Populus trichocarpa	Chr04	17	CH_ptr_89	11	18	0.00000000000139439
Populus trichocarpa	Chr05	17	CH_ptr_230	7	11	0.000000626888
Populus trichocarpa	Chr17	17	CH_ptr_196	10	29	0.0000000618053
Populus trichocarpa	Chr18	17	CH_ptr_97	15	53	0.00000000000442271
Populus trichocarpa	Chr04	18	CH_ptr_60	11	18	0.00000000000139439
Populus trichocarpa	Chr04	18	CH_ptr_93	10	46	0.0000103732
Populus trichocarpa	Chr17	18	CH_ptr_80	10	29	0.0000000618053
Populus trichocarpa	Chr18	18	CH_ptr_62	15	53	0.00000000000442271
Populus trichocarpa	Chr18	19	CH_ptr_6	10	53	0.00000601736
Setaria italica	scaffold_4	17	CH_sit_396	4	4	0.00033782
Setaria italica	scaffold_8	17	CH_sit_373	6	16	0.000238978
Solanum lycopersicum	ch05	17	CH_sly_274	5	6	0.0000131079
Solanum lycopersicum	ch05	17	CH_sly_75	8	9	0.0000000000143964
Solanum lycopersicum	ch05	19	CH_sly_25	5	9	0.000153081

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V