PLAZA 3.0 Monocots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis thaliana	3	17	CH_ath_397	5	6	0.000984657
Arabidopsis thaliana	3	17	CH_ath_140	8	9	0.0000000151336
Arabidopsis thaliana	3	19	CH_ath_72	6	7	0.0000133437
Chlamydomonas reinhardtii	chromosome_11	17	CH_cre_18	8	8	0.000000108031
Populus trichocarpa	Chr15	17	CH_ptr_362	7	9	0.0000931214
Setaria italica	scaffold_5	17	CH_sit_411	5	5	0.000475135
Solanum lycopersicum	ch03	17	CH_sly_267	8	11	0.00000920283
Solanum lycopersicum	ch11	17	CH_sly_279	7	8	0.0000140217
Solanum lycopersicum	ch12	17	CH_sly_37	15	17	3.87274e-16
Solanum lycopersicum	ch05	18	CH_sly_85	11	29	0.0000463588
Solanum lycopersicum	ch12	18	CH_sly_30	15	17	3.87274e-16
Zea mays	1	17	CH_zma_31	10	12	0.000000000990732
Zea mays	1	17	CH_zma_185	10	30	0.000276231
Zea mays	1	18	CH_zma_14	10	12	0.000000000990732
Zea mays	1	18	CH_zma_33	10	30	0.000276231

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V