PLAZA 3.0 Monocots : Functional Clustering

Functional clusters

Type: Mapman term
Identifier: 29.2.2.3.2
Description: protein.synthesis.ribosome biogenesis.Pre-rRNA processing and modifications.snoRNAs

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis thaliana	2	17	CH_ath_187	4	4	0.00000051521
Arabidopsis thaliana	2	17	CH_ath_351	3	3	0.000266324
Arabidopsis thaliana	2	17	CH_ath_270	6	51	0.0000308212
Arabidopsis thaliana	3	17	CH_ath_349	3	3	0.000266324
Arabidopsis thaliana	3	17	CH_ath_350	3	3	0.000266324
Arabidopsis thaliana	4	17	CH_ath_188	4	4	0.00000051521
Arabidopsis thaliana	2	19	CH_ath_77	6	51	0.0000308212
Arabidopsis thaliana	2	19	CH_ath_62	4	4	0.00000051521
Arabidopsis thaliana	2	19	CH_ath_95	3	3	0.000266324
Arabidopsis thaliana	3	19	CH_ath_94	3	3	0.000266324
Arabidopsis thaliana	3	19	CH_ath_93	3	3	0.000266324
Arabidopsis thaliana	4	19	CH_ath_63	4	4	0.00000051521

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V