PLAZA 3.0 Monocots : Functional Clustering

Functional clusters

Information

Type: Mapman term
Identifier: 28.1.3
Description: DNA.synthesis/chromatin structure.histone

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Brachypodium distachyon	Bd1	17	CH_bdi_234	3	3	0.000408605
Chlamydomonas reinhardtii	chromosome_12	17	CH_cre_3	18	40	3.9858e-24
Chlamydomonas reinhardtii	chromosome_13	17	CH_cre_36	4	4	0.0000567212
Chlamydomonas reinhardtii	chromosome_17	17	CH_cre_4	16	66	5.60884e-16
Chlamydomonas reinhardtii	chromosome_17	17	CH_cre_5	16	74	0.00000000000000418967
Chlamydomonas reinhardtii	chromosome_6	17	CH_cre_1	27	66	1.36811e-36
Chlamydomonas reinhardtii	chromosome_6	17	CH_cre_2	27	80	7.89528e-34
Chlamydomonas reinhardtii	chromosome_12	18	CH_cre_3	18	40	3.9858e-24
Chlamydomonas reinhardtii	chromosome_17	18	CH_cre_2	29	143	2.27429e-29
Chlamydomonas reinhardtii	chromosome_6	18	CH_cre_1	58	265	8.95833e-67
Chlamydomonas reinhardtii	chromosome_12	19	CH_cre_10	4	7	0.0000383818
Chlamydomonas reinhardtii	chromosome_13	19	CH_cre_7	4	4	0.00000110388
Chlamydomonas reinhardtii	chromosome_17	19	CH_cre_17	4	10	0.000228777
Chlamydomonas reinhardtii	chromosome_17	19	CH_cre_3	8	40	0.00000000354488
Chlamydomonas reinhardtii	chromosome_6	19	CH_cre_5	8	61	0.000000129512
Chlamydomonas reinhardtii	chromosome_6	19	CH_cre_2	5	5	0.00000000295154
Chlamydomonas reinhardtii	chromosome_17	20	CH_cre_1	12	118	0.0000000000104916
Chlamydomonas reinhardtii	chromosome_6	20	CH_cre_2	14	242	0.000000000085764
Oryza sativa ssp. japonica	1	17	CH_osa_279	5	34	0.0000299633
Oryza sativa ssp. japonica	5	17	CH_osa_370	5	50	0.000224787
Oryza sativa ssp. japonica	6	17	CH_osa_427	3	5	0.000880257
Populus trichocarpa	Chr03	17	CH_ptr_215	6	25	0.000000264024
Populus trichocarpa	Chr05	17	CH_ptr_467	4	15	0.000645544
Populus trichocarpa	Chr07	17	CH_ptr_304	5	19	0.00000984673
Populus trichocarpa	Chr08	17	CH_ptr_330	4	8	0.0000334461
Solanum lycopersicum	ch05	17	CH_sly_13	10	10	2.51478e-22
Solanum lycopersicum	ch06	17	CH_sly_292	5	17	0.0000206824
Solanum lycopersicum	ch11	17	CH_sly_430	4	11	0.000455401
Solanum lycopersicum	ch05	18	CH_sly_12	10	10	2.51478e-22
Vitis vinifera	chr13	17	CH_vvi_342	3	3	0.000140725
Vitis vinifera	chr6	17	CH_vvi_210	5	15	0.00000114095
Vitis vinifera	chr7	17	CH_vvi_211	4	5	0.00000117594

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V