PLAZA 3.0 Monocots : Functional Clustering

Functional clusters

Information

Type: Mapman term
Identifier: 28
Description: DNA

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis thaliana	2	17	CH_ath_73	30	53	0.000000000000237548
Arabidopsis thaliana	2	17	CH_ath_53	30	47	0.00000000000000182753
Arabidopsis thaliana	2	17	CH_ath_280	27	80	0.0000467005
Arabidopsis thaliana	2	17	CH_ath_105	27	52	0.000000000194404
Arabidopsis thaliana	2	17	CH_ath_63	30	50	0.0000000000000237535
Arabidopsis thaliana	2	17	CH_ath_161	30	77	0.0000000863371
Arabidopsis thaliana	3	17	CH_ath_40	30	43	3.54134e-17
Arabidopsis thaliana	1	18	CH_ath_62	67	300	0.00000033177
Arabidopsis thaliana	2	18	CH_ath_6	149	281	1.21745e-73
Arabidopsis thaliana	2	18	CH_ath_79	62	299	0.0000457563
Arabidopsis thaliana	2	18	CH_ath_61	67	298	0.000000241299
Arabidopsis thaliana	2	18	CH_ath_15	110	280	3.17952e-37
Arabidopsis thaliana	2	18	CH_ath_22	101	300	2.9432e-27
Arabidopsis thaliana	2	19	CH_ath_57	30	77	0.0000000652675
Arabidopsis thaliana	2	19	CH_ath_42	30	53	0.000000000000175037
Arabidopsis thaliana	2	19	CH_ath_31	30	47	0.00000000000000133799
Arabidopsis thaliana	2	19	CH_ath_78	27	80	0.0000367154
Arabidopsis thaliana	2	19	CH_ath_49	27	52	0.000000000148374
Arabidopsis thaliana	2	19	CH_ath_37	30	50	0.0000000000000174467
Arabidopsis thaliana	3	19	CH_ath_24	30	44	7.39894e-17
Arabidopsis thaliana	3	19	CH_ath_23	30	43	2.58163e-17
Arabidopsis thaliana	1	20	CH_ath_27	67	300	0.000000203843
Arabidopsis thaliana	2	20	CH_ath_26	67	298	0.000000147936
Arabidopsis thaliana	2	20	CH_ath_13	110	280	1.12569e-37
Arabidopsis thaliana	2	20	CH_ath_18	101	300	1.19118e-27
Arabidopsis thaliana	2	20	CH_ath_6	149	281	2.64823e-74
Arabidopsis thaliana	2	20	CH_ath_32	62	299	0.0000298354
Populus trichocarpa	Chr05	17	CH_ptr_239	6	6	0.00000108459
Populus trichocarpa	Chr05	18	CH_ptr_92	12	57	0.00000965494

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V