PLAZA 3.0 Monocots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Populus trichocarpa	Chr16	17	CH_ptr_104	6	6	0.0000000000142153
Populus trichocarpa	Chr19	17	CH_ptr_112	7	13	0.0000000000619525
Solanum lycopersicum	ch07	17	CH_sly_87	7	12	0.0000000000983943
Solanum lycopersicum	ch08	17	CH_sly_93	7	13	0.000000000212601
Solanum lycopersicum	ch08	17	CH_sly_60	12	75	0.000000000000719482
Solanum lycopersicum	ch08	18	CH_sly_46	12	75	0.000000000000719482
Solanum lycopersicum	ch08	19	CH_sly_35	3	3	0.000474077
Vitis vinifera	chr10	17	CH_vvi_116	5	5	0.000000000652609
Zea mays	1	17	CH_zma_178	3	3	0.000208069
Zea mays	3	17	CH_zma_228	3	4	0.000831088
Zea mays	1	19	CH_zma_11	3	3	0.000148088

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V