PLAZA 3.0 Monocots : Functional Clustering

Functional clusters

Type: Mapman term
Identifier: 27.3.32
Description: RNA.regulation of transcription.WRKY domain transcription factor family

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Brachypodium distachyon	Bd2	17	CH_bdi_77	5	6	0.0000000421474
Brachypodium distachyon	Bd4	17	CH_bdi_123	4	4	0.000002364
Brachypodium distachyon	Bd4	19	CH_bdi_15	3	3	0.000408605
Oryza sativa ssp. japonica	1	17	CH_osa_213	5	15	0.00000248909
Oryza sativa ssp. japonica	11	17	CH_osa_139	5	8	0.0000000468763
Oryza sativa ssp. japonica	12	17	CH_osa_140	5	8	0.0000000468763
Oryza sativa ssp. japonica	5	17	CH_osa_377	3	3	0.000293085
Populus trichocarpa	Chr18	17	CH_ptr_399	4	9	0.000250302
Setaria italica	scaffold_5	17	CH_sit_150	5	6	0.0000000589613
Setaria italica	scaffold_7	17	CH_sit_166	5	8	0.000000205843
Setaria italica	scaffold_8	17	CH_sit_165	5	7	0.000000205843
Setaria italica	scaffold_8	17	CH_sit_96	6	7	0.000000000206287
Solanum lycopersicum	ch05	17	CH_sly_247	6	31	0.00000406415
Zea mays	3	17	CH_zma_89	4	4	0.00000188952

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V