PLAZA 3.0 Monocots : Functional Clustering

Functional clusters

Type: Mapman term
Identifier: 27.3.3
Description: RNA.regulation of transcription.AP2/EREBP, APETALA2/Ethylene-responsive element binding protein family

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Brachypodium distachyon	Bd4	17	CH_bdi_11	9	9	3.50673e-17
Brachypodium distachyon	Bd5	17	CH_bdi_163	4	4	0.0000150729
Brachypodium distachyon	Bd4	19	CH_bdi_5	6	9	0.0000000115247
Oryza sativa ssp. japonica	3	17	CH_osa_247	4	5	0.0000088522
Oryza sativa ssp. japonica	6	17	CH_osa_369	4	9	0.000221401
Oryza sativa ssp. japonica	9	17	CH_osa_419	3	3	0.000755534
Oryza sativa ssp. japonica	9	19	CH_osa_37	3	3	0.00048841
Physcomitrella patens	scaffold_259	17	CH_ppa_58	4	8	0.000832022
Populus trichocarpa	Chr14	17	CH_ptr_359	4	5	0.0000881578
Setaria italica	scaffold_2	17	CH_sit_223	5	8	0.00000338367
Setaria italica	scaffold_4	17	CH_sit_196	5	7	0.00000127353
Setaria italica	scaffold_9	17	CH_sit_265	4	4	0.0000139311
Solanum lycopersicum	ch01	17	CH_sly_461	4	8	0.000699499
Zea mays	1	17	CH_zma_113	4	4	0.0000129587
Zea mays	2	17	CH_zma_207	5	18	0.000476822
Zea mays	7	17	CH_zma_161	4	6	0.000192967
Zea mays	1	18	CH_zma_26	11	159	0.00000672436
Zea mays	1	19	CH_zma_5	4	4	0.0000067701
Zea mays	7	19	CH_zma_10	4	6	0.000100925

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V