PLAZA 3.0 Monocots : Functional Clustering

Functional clusters

Type: Mapman term
Identifier: 27.3.25
Description: RNA.regulation of transcription.MYB domain transcription factor family

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Brachypodium distachyon	Bd2	17	CH_bdi_78	5	5	0.0000000424362
Brachypodium distachyon	Bd2	19	CH_bdi_8	5	5	0.0000000257844
Populus trichocarpa	Chr17	17	CH_ptr_281	5	5	0.00000463071
Setaria italica	scaffold_2	17	CH_sit_296	4	5	0.0000403355
Solanum lycopersicum	ch10	19	CH_sly_41	4	5	0.000856314
Vitis vinifera	chr2	17	CH_vvi_100	7	8	0.0000000000294593
Vitis vinifera	chr4	17	CH_vvi_144	6	8	0.0000000192735
Vitis vinifera	chr2	19	CH_vvi_1	7	8	0.00000000000500494
Zea mays	1	17	CH_zma_20	7	8	0.0000000000178665

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V