PLAZA 3.0 Monocots : Functional Clustering

Functional clusters

Information

Type: Mapman term
Identifier: 26.28
Description: misc.GDSL-motif lipase

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis thaliana	1	17	CH_ath_80	7	9	0.00000000000118926
Arabidopsis thaliana	5	17	CH_ath_266	4	6	0.000027588
Arabidopsis thaliana	5	17	CH_ath_321	6	49	0.000162675
Brachypodium distachyon	Bd1	17	CH_bdi_138	7	35	0.00000410187
Brachypodium distachyon	Bd2	17	CH_bdi_122	5	8	0.00000215552
Brachypodium distachyon	Bd2	17	CH_bdi_73	6	10	0.0000000337052
Chlamydomonas reinhardtii	chromosome_9	17	CH_cre_49	2	2	0.000113759
Oryza sativa ssp. japonica	1	17	CH_osa_19	11	22	1.74855e-19
Oryza sativa ssp. japonica	1	17	CH_osa_103	6	11	0.00000000285799
Oryza sativa ssp. japonica	10	17	CH_osa_266	4	6	0.0000200107
Oryza sativa ssp. japonica	3	17	CH_osa_240	4	5	0.00000668193
Oryza sativa ssp. japonica	5	17	CH_osa_198	4	4	0.00000133873
Oryza sativa ssp. japonica	6	17	CH_osa_300	4	7	0.0000466097
Oryza sativa ssp. japonica	1	18	CH_osa_21	11	22	1.74855e-19
Populus trichocarpa	Chr11	17	CH_ptr_228	5	7	0.000000597805
Populus trichocarpa	Chr17	17	CH_ptr_159	10	70	0.000000005651
Populus trichocarpa	Chr18	17	CH_ptr_50	9	11	2.66278e-16
Populus trichocarpa	Chr19	17	CH_ptr_54	12	39	7.64423e-16
Populus trichocarpa	Chr19	17	CH_ptr_338	4	5	0.0000388652
Populus trichocarpa	Chr17	18	CH_ptr_75	10	70	0.000000005651
Populus trichocarpa	Chr19	18	CH_ptr_46	12	39	7.64423e-16
Populus trichocarpa	Chr10	19	CH_ptr_16	3	3	0.000535412
Setaria italica	scaffold_4	17	CH_sit_145	5	5	0.0000000470326
Setaria italica	scaffold_5	17	CH_sit_146	5	5	0.0000000470326
Setaria italica	scaffold_5	17	CH_sit_134	6	9	0.0000000161464
Setaria italica	scaffold_5	17	CH_sit_31	9	9	1.31395e-17
Setaria italica	scaffold_9	17	CH_sit_255	4	4	0.0000113089
Setaria italica	scaffold_9	17	CH_sit_305	4	5	0.0000563549
Setaria italica	scaffold_5	18	CH_sit_29	10	14	5.20789e-17
Solanum lycopersicum	ch01	17	CH_sly_61	7	8	0.000000000000830968
Solanum lycopersicum	ch02	17	CH_sly_418	5	23	0.000355504
Solanum lycopersicum	ch02	17	CH_sly_86	7	12	0.0000000000813892
Solanum lycopersicum	ch04	17	CH_sly_133	5	5	0.0000000110711
Solanum lycopersicum	ch06	17	CH_sly_161	5	6	0.000000066254
Solanum lycopersicum	ch10	17	CH_sly_278	5	13	0.0000139552
Solanum lycopersicum	ch02	18	CH_sly_61	12	176	0.00000001933
Solanum lycopersicum	ch05	19	CH_sly_33	3	3	0.000363952
Vitis vinifera	chr1	17	CH_vvi_247	4	4	0.00000517741
Vitis vinifera	chr10	17	CH_vvi_143	5	5	0.000000018905
Vitis vinifera	chr13	17	CH_vvi_301	5	15	0.0000550645
Vitis vinifera	chr14	17	CH_vvi_248	4	4	0.00000517741
Vitis vinifera	chr18	17	CH_vvi_78	7	7	0.000000000000244266
Vitis vinifera	chr9	17	CH_vvi_56	8	8	8.6415e-16
Vitis vinifera	chr9	18	CH_vvi_95	11	225	0.0000267064
Vitis vinifera	chr13	19	CH_vvi_12	5	15	0.0000052016
Vitis vinifera	chr14	19	CH_vvi_33	3	3	0.00034464
Zea mays	3	17	CH_zma_23	6	7	0.0000000000851682
Zea mays	3	17	CH_zma_87	4	4	0.00000171282
Zea mays	5	17	CH_zma_216	3	3	0.000629755
Zea mays	6	17	CH_zma_137	4	7	0.0000595571

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V