PLAZA 3.0 Monocots : Functional Clustering

Functional clusters

Information

Type: Mapman term
Identifier: 26.22
Description: misc.short chain dehydrogenase/reductase (SDR)

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis thaliana	2	17	CH_ath_181	4	4	0.00000037684
Arabidopsis thaliana	3	17	CH_ath_388	3	4	0.000842965
Arabidopsis thaliana	5	17	CH_ath_253	5	22	0.0000169962
Brachypodium distachyon	Bd1	17	CH_bdi_236	3	3	0.000446893
Brachypodium distachyon	Bd5	17	CH_bdi_41	6	7	0.0000000000459533
Brachypodium distachyon	Bd5	18	CH_bdi_44	10	294	0.000120427
Oryza sativa ssp. japonica	10	17	CH_osa_199	4	5	0.00000153553
Oryza sativa ssp. japonica	4	17	CH_osa_154	5	10	0.000000114544
Oryza sativa ssp. japonica	6	17	CH_osa_83	6	11	0.000000000308585
Oryza sativa ssp. japonica	7	17	CH_osa_9	13	16	3.90516e-30
Oryza sativa ssp. japonica	7	18	CH_osa_9	13	16	3.90516e-30
Populus trichocarpa	Chr02	17	CH_ptr_210	5	8	0.000000186382
Populus trichocarpa	Chr03	17	CH_ptr_460	3	3	0.000587758
Populus trichocarpa	Chr04	17	CH_ptr_461	3	3	0.000587758
Populus trichocarpa	Chr06	17	CH_ptr_122	6	8	0.000000000219358
Populus trichocarpa	Chr10	17	CH_ptr_459	3	3	0.000587758
Populus trichocarpa	Chr15	17	CH_ptr_458	3	3	0.000587758
Populus trichocarpa	Chr16	17	CH_ptr_247	4	4	0.00000141016
Setaria italica	scaffold_1	17	CH_sit_248	4	5	0.00000757633
Setaria italica	scaffold_2	17	CH_sit_427	3	3	0.000603017
Setaria italica	scaffold_2	17	CH_sit_428	3	3	0.000603017
Setaria italica	scaffold_6	17	CH_sit_117	5	5	0.00000000378015
Setaria italica	scaffold_7	17	CH_sit_429	3	3	0.000603017
Setaria italica	scaffold_7	17	CH_sit_12	11	11	7.05235e-25
Setaria italica	scaffold_9	17	CH_sit_366	4	9	0.000189386
Setaria italica	scaffold_7	18	CH_sit_15	11	11	7.05235e-25
Solanum lycopersicum	ch00	17	CH_sly_435	3	3	0.000509184
Solanum lycopersicum	ch01	17	CH_sly_80	6	7	0.000000000046837
Solanum lycopersicum	ch03	17	CH_sly_257	4	5	0.00000607361
Solanum lycopersicum	ch12	17	CH_sly_453	4	12	0.000593262
Solanum lycopersicum	ch00	19	CH_sly_28	3	3	0.000238347
Vitis vinifera	chr1	17	CH_vvi_273	4	6	0.0000160652
Vitis vinifera	chr15	17	CH_vvi_89	7	10	0.00000000000176419
Vitis vinifera	chr16	17	CH_vvi_294	4	7	0.000037411
Vitis vinifera	chr17	17	CH_vvi_389	3	3	0.000434942
Vitis vinifera	chr8	17	CH_vvi_388	3	3	0.000434942
Vitis vinifera	chr8	17	CH_vvi_75	7	8	0.000000000000118101
Vitis vinifera	chr8	19	CH_vvi_26	3	3	0.0000996314
Zea mays	10	17	CH_zma_180	3	3	0.000208069
Zea mays	2	17	CH_zma_179	3	3	0.000208069

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V