PLAZA 3.0 Monocots : Functional Clustering

Functional clusters

Information

Type: Mapman term
Identifier: 20.1.7
Description: stress.biotic.PR-proteins

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis thaliana	3	17	CH_ath_320	5	6	0.0001588
Arabidopsis thaliana	5	17	CH_ath_311	12	80	0.000106491
Arabidopsis thaliana	1	18	CH_ath_96	20	290	0.00085266
Arabidopsis thaliana	4	18	CH_ath_77	22	295	0.0000403221
Arabidopsis thaliana	5	18	CH_ath_83	21	287	0.000134825
Arabidopsis thaliana	5	18	CH_ath_76	21	267	0.000036969
Arabidopsis thaliana	4	20	CH_ath_35	18	295	0.0000525209
Brachypodium distachyon	Bd1	17	CH_bdi_159	4	11	0.0000115674
Brachypodium distachyon	Bd4	17	CH_bdi_40	5	5	0.0000000000345638
Brachypodium distachyon	Bd4	17	CH_bdi_209	3	4	0.000138408
Oryza sativa ssp. japonica	1	17	CH_osa_275	7	20	0.0000253737
Oryza sativa ssp. japonica	11	17	CH_osa_130	9	23	0.0000000230216
Oryza sativa ssp. japonica	11	17	CH_osa_237	7	17	0.00000652444
Oryza sativa ssp. japonica	11	17	CH_osa_316	5	7	0.0000858604
Oryza sativa ssp. japonica	11	17	CH_osa_116	13	71	0.00000000826929
Oryza sativa ssp. japonica	11	17	CH_osa_258	8	29	0.0000122548
Oryza sativa ssp. japonica	12	17	CH_osa_218	11	69	0.00000304283
Oryza sativa ssp. japonica	12	17	CH_osa_195	7	14	0.0000011801
Oryza sativa ssp. japonica	4	17	CH_osa_410	6	18	0.00065606
Oryza sativa ssp. japonica	8	17	CH_osa_323	8	37	0.000103136
Oryza sativa ssp. japonica	11	18	CH_osa_79	19	298	0.00000580372
Oryza sativa ssp. japonica	11	18	CH_osa_52	15	118	0.0000000295606
Oryza sativa ssp. japonica	12	18	CH_osa_37	22	185	0.000000000000491446
Oryza sativa ssp. japonica	11	19	CH_osa_42	4	6	0.000688719
Oryza sativa ssp. japonica	12	19	CH_osa_21	5	9	0.0000305108
Physcomitrella patens	scaffold_107	17	CH_ppa_16	4	6	0.0000198487
Physcomitrella patens	scaffold_31	17	CH_ppa_50	3	3	0.000525353
Physcomitrella patens	scaffold_31	19	CH_ppa_3	3	3	0.00027679
Populus trichocarpa	Chr01	17	CH_ptr_486	4	5	0.000891922
Populus trichocarpa	Chr03	17	CH_ptr_485	4	5	0.000891922
Populus trichocarpa	Chr05	17	CH_ptr_261	7	18	0.0000028066
Populus trichocarpa	Chr05	17	CH_ptr_385	5	9	0.000178838
Populus trichocarpa	Chr07	17	CH_ptr_200	6	7	0.0000000820974
Populus trichocarpa	Chr07	17	CH_ptr_386	5	9	0.000178838
Populus trichocarpa	Chr10	17	CH_ptr_219	6	8	0.000000326109
Populus trichocarpa	Chr11	17	CH_ptr_22	22	73	4.64722e-24
Populus trichocarpa	Chr13	17	CH_ptr_43	12	18	5.54392e-17
Populus trichocarpa	Chr14	17	CH_ptr_120	9	17	0.000000000141237
Populus trichocarpa	Chr16	17	CH_ptr_387	4	4	0.000179556
Populus trichocarpa	Chr17	17	CH_ptr_38	14	29	1.35614e-17
Populus trichocarpa	Chr19	17	CH_ptr_96	10	19	0.00000000000425991
Populus trichocarpa	Chr19	17	CH_ptr_71	12	26	0.0000000000000271913
Populus trichocarpa	Chr19	17	CH_ptr_155	9	23	0.00000000454575
Populus trichocarpa	scaffold_38	17	CH_ptr_127	10	27	0.00000000036697
Populus trichocarpa	scaffold_47	17	CH_ptr_80	12	30	0.000000000000236453
Populus trichocarpa	scaffold_73	17	CH_ptr_209	8	21	0.000000142232
Populus trichocarpa	Chr11	18	CH_ptr_21	22	73	4.64722e-24
Populus trichocarpa	Chr13	18	CH_ptr_40	12	18	5.54392e-17
Populus trichocarpa	Chr17	18	CH_ptr_34	14	29	1.35614e-17
Populus trichocarpa	Chr19	18	CH_ptr_61	10	19	0.00000000000425991
Populus trichocarpa	Chr19	18	CH_ptr_53	12	26	0.0000000000000271913
Populus trichocarpa	scaffold_38	18	CH_ptr_70	10	27	0.00000000036697
Populus trichocarpa	scaffold_47	18	CH_ptr_58	12	30	0.000000000000236453
Setaria italica	scaffold_2	17	CH_sit_326	3	4	0.0000701432
Setaria italica	scaffold_5	17	CH_sit_327	3	4	0.0000701432
Setaria italica	scaffold_8	17	CH_sit_100	5	8	0.000000000510284
Solanum lycopersicum	ch02	17	CH_sly_297	7	61	0.0000233098
Solanum lycopersicum	ch07	17	CH_sly_231	4	4	0.00000263529
Solanum lycopersicum	ch12	17	CH_sly_217	6	22	0.0000015524
Vitis vinifera	chr10	17	CH_vvi_306	4	4	0.0000623723
Vitis vinifera	chr14	17	CH_vvi_150	8	21	0.0000000254993
Vitis vinifera	chr14	17	CH_vvi_281	7	28	0.0000209064
Vitis vinifera	chr18	17	CH_vvi_74	15	75	0.000000000000106604
Vitis vinifera	chr18	17	CH_vvi_139	11	59	0.00000000848662
Vitis vinifera	chr18_random	17	CH_vvi_200	6	10	0.000000603019
Vitis vinifera	chr5	17	CH_vvi_130	8	17	0.00000000312077
Vitis vinifera	chr5	17	CH_vvi_118	7	9	0.000000000712085
Vitis vinifera	chr6	17	CH_vvi_441	4	6	0.000925237
Vitis vinifera	chr7	17	CH_vvi_99	8	11	0.0000000000219634
Vitis vinifera	chr14	18	CH_vvi_63	19	284	0.0000000046488
Vitis vinifera	chr18	18	CH_vvi_11	37	282	9.08935e-32
Vitis vinifera	chr18_random	18	CH_vvi_80	12	108	0.000000416891
Vitis vinifera	chr5	18	CH_vvi_55	16	153	0.000000000404152
Vitis vinifera	chr5	19	CH_vvi_16	5	16	0.0000211242
Vitis vinifera	chr18	20	CH_vvi_2	12	282	0.000000942788

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V