PLAZA 3.0 Monocots : Functional Clustering

Functional clusters

Type: Mapman term
Identifier: 11.9.4.13
Description: lipid metabolism.lipid degradation.beta-oxidation.acyl CoA reductase

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis thaliana	3	17	CH_ath_167	3	3	0.000000106283
Oryza sativa ssp. japonica	4	17	CH_osa_64	5	17	0.0000000000353421
Populus trichocarpa	Chr19	17	CH_ptr_258	3	4	0.00000247277
Setaria italica	scaffold_2	17	CH_sit_190	3	3	0.00000105641
Setaria italica	scaffold_6	17	CH_sit_191	3	3	0.00000105641
Solanum lycopersicum	ch11	17	CH_sly_204	3	3	0.00000059705

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V