PLAZA 3.0 Monocots : Functional Clustering

Functional clusters

Type: Mapman term
Identifier: 11.9.2.1
Description: lipid metabolism.lipid degradation.lipases.triacylglycerol lipase

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Brachypodium distachyon	Bd2	17	CH_bdi_248	3	5	0.000661417
Oryza sativa ssp. japonica	1	17	CH_osa_424	3	6	0.000800988
Oryza sativa ssp. japonica	1	17	CH_osa_343	3	4	0.00016041
Oryza sativa ssp. japonica	7	17	CH_osa_390	3	5	0.00040076
Physcomitrella patens	scaffold_1	17	CH_ppa_28	3	3	0.0000762662
Populus trichocarpa	Chr14	17	CH_ptr_118	5	5	0.000000000121662
Populus trichocarpa	Chr14	17	CH_ptr_358	3	3	0.0000828149
Setaria italica	scaffold_2	17	CH_sit_105	5	6	0.000000000878535
Setaria italica	scaffold_5	17	CH_sit_330	3	3	0.0000884694
Setaria italica	scaffold_5	17	CH_sit_450	3	5	0.000882918
Solanum lycopersicum	ch02	17	CH_sly_19	10	18	5.12998e-20
Solanum lycopersicum	ch02	17	CH_sly_356	3	3	0.00012341
Solanum lycopersicum	ch02	18	CH_sly_18	10	18	5.12998e-20
Vitis vinifera	chr10	17	CH_vvi_117	5	6	0.000000000656042
Vitis vinifera	chr16	17	CH_vvi_307	3	3	0.0000674335
Vitis vinifera	chr7	17	CH_vvi_377	3	4	0.000269462
Zea mays	10	17	CH_zma_131	3	3	0.0000387979

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V