Functional clusters   top

Information

Type
Mapman term
Identifier
10.6.3
Description
cell wall.degradation.pectate lyases and polygalacturonases

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Arabidopsis thaliana117CH_ath_118680.00000000112009
Arabidopsis thaliana217CH_ath_286460.0000586317
Arabidopsis thaliana317CH_ath_223440.00000392919
Arabidopsis thaliana119CH_ath_88480.000112218
Brachypodium distachyonBd117CH_bdi_232330.000372567
Brachypodium distachyonBd217CH_bdi_109440.000000870977
Oryza sativa ssp. japonica717CH_osa_225470.00000416777
Populus trichocarpaChr0217CH_ptr_287440.00000526093
Populus trichocarpaChr0417CH_ptr_2795100.00000434602
Populus trichocarpaChr0717CH_ptr_3175130.0000220116
Populus trichocarpaChr1717CH_ptr_4012332.11295e-17
Populus trichocarpaChr1917CH_ptr_206560.000000104633
Populus trichocarpaChr1718CH_ptr_3612332.11295e-17
Setaria italicascaffold_617CH_sit_387330.000286383
Solanum lycopersicumch0417CH_sly_234440.00000307141
Solanum lycopersicumch0517CH_sly_235440.00000307141
Solanum lycopersicumch1117CH_sly_78660.0000000000272874
Solanum lycopersicumch1217CH_sly_1466120.0000000248307
Vitis viniferachr1217CH_vvi_828130.000000000000344525
Vitis viniferachr1317CH_vvi_266450.0000146572
Vitis viniferachr1617CH_vvi_440330.000919898
Vitis viniferachr817CH_vvi_231440.00000293897
Vitis viniferachr917CH_vvi_265450.0000146572
Zea mays617CH_zma_114161.73032e-32
Zea mays618CH_zma_114161.73032e-32

Functional clusters experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1GOPrimary GO data only.230800.001X
2GOPrimary and orthology projected GO data.230800.001X
3GOAll GO data.230800.001X
4GOPrimary GO data only.101503000.001X
5GOPrimary and orthology projected GO data.101503000.001X
6GOAll GO data.101503000.001X
7GOPrimary GO data only.230800.001V
8GOPrimary and orthology projected GO data.230800.001V
9GOAll GO data.230800.001V
10GOPrimary GO data only.101503000.001V
11GOPrimary and orthology projected GO data.101503000.001V
12GOAll GO data.101503000.001V
13InterProNo filter applied.230800.001X
14InterProNo filter applied.101503000.001X
15InterProNo filter applied.230800.001V
16InterProNo filter applied.101503000.001V
17MapManNo filter applied.230800.001X
18MapManNo filter applied.101503000.001X
19MapManNo filter applied.230800.001V
20MapManNo filter applied.101503000.001V