PLAZA 3.0 Monocots : Functional Clustering

Functional clusters

Information

Type: InterPro domain
Identifier: IPR027923
Description: Hydrophobic seed protein

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis thaliana	4	13	CH_ath_20	9	10	3.19521e-23
Arabidopsis thaliana	4	15	CH_ath_2	4	8	0.0000000316326
Brachypodium distachyon	Bd1	13	CH_bdi_150	4	5	0.0000000947382
Brachypodium distachyon	Bd2	13	CH_bdi_325	3	4	0.0000878095
Brachypodium distachyon	Bd3	13	CH_bdi_143	5	16	0.00000006786
Brachypodium distachyon	Bd4	13	CH_bdi_59	5	5	0.0000000000156549
Musa acuminata	chr4	13	CH_mac_135	3	3	0.00000191647
Oryza sativa ssp. indica	Chr01	13	CH_osaindica_625	3	4	0.0000466002
Oryza sativa ssp. indica	Chr03	13	CH_osaindica_848	3	7	0.000407218
Oryza sativa ssp. indica	Chr04	13	CH_osaindica_789	3	6	0.000232798
Oryza sativa ssp. indica	Chr10	13	CH_osaindica_48	8	10	2.02922e-20
Oryza sativa ssp. japonica	10	13	CH_osa_35	9	11	4.33914e-23
Oryza sativa ssp. japonica	10	13	CH_osa_159	5	6	0.0000000000419814
Oryza sativa ssp. japonica	3	13	CH_osa_251	4	4	0.0000000112105
Oryza sativa ssp. japonica	4	13	CH_osa_492	3	3	0.0000174538
Oryza sativa ssp. japonica	10	14	CH_osa_38	10	23	4.80583e-22
Oryza sativa ssp. japonica	3	15	CH_osa_31	3	3	0.00000185061
Populus trichocarpa	Chr01	13	CH_ptr_214	4	4	0.00000000113401
Populus trichocarpa	Chr06	13	CH_ptr_467	3	4	0.0000121399
Setaria italica	scaffold_7	13	CH_sit_208	4	5	0.00000000639462
Setaria italica	scaffold_9	13	CH_sit_127	5	7	0.00000000000983937
Solanum lycopersicum	ch03	13	CH_sly_12	11	11	8.24094e-31
Solanum lycopersicum	ch08	13	CH_sly_48	10	37	4.92814e-19
Solanum lycopersicum	ch03	14	CH_sly_12	11	11	8.24094e-31
Solanum lycopersicum	ch08	14	CH_sly_34	10	37	4.92814e-19
Solanum lycopersicum	ch08	15	CH_sly_21	3	6	0.0000217118
Sorghum bicolor	chr_1	13	CH_sbi_389	3	3	0.000010268
Sorghum bicolor	chr_4	13	CH_sbi_86	6	8	0.000000000000056365
Sorghum bicolor	chr_6	13	CH_sbi_195	4	4	0.00000000627025
Zea mays	1	13	CH_zma_261	3	3	0.0000138632
Zea mays	10	13	CH_zma_150	4	6	0.000000135818
Zea mays	UNKNOWN	13	CH_zma_50	5	5	0.00000000000569854

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V