PLAZA 3.0 Monocots : Functional Clustering

Functional clusters

Information

Type: InterPro domain
Identifier: IPR027443
Description: Isopenicillin N synthase-like

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Brachypodium distachyon	Bd1	13	CH_bdi_264	4	5	0.0000176715
Brachypodium distachyon	Bd1	13	CH_bdi_45	7	8	0.000000000000983967
Brachypodium distachyon	Bd1	15	CH_bdi_11	4	5	0.0000105257
Carica papaya	supercontig_10	13	CH_cpa_8	11	14	1.60882e-21
Carica papaya	supercontig_44	13	CH_cpa_77	5	6	0.0000000415734
Carica papaya	supercontig_62	13	CH_cpa_417	3	3	0.000708553
Carica papaya	supercontig_10	14	CH_cpa_7	11	14	1.60882e-21
Chlamydomonas reinhardtii	chromosome_17	13	CH_cre_15	5	8	0.0000000000539854
Musa acuminata	chr11	13	CH_mac_26	7	10	0.00000000000541935
Musa acuminata	chr5	13	CH_mac_139	4	4	0.00000230376
Musa acuminata	chrUn_random	13	CH_mac_144	5	11	0.0000028653
Musa acuminata	chr11	14	CH_mac_10	10	259	0.000142967
Oryza sativa ssp. indica	Chr08	13	CH_osaindica_258	6	12	0.00000000411924
Oryza sativa ssp. indica	Chr10	14	CH_osaindica_92	10	197	0.000000974454
Oryza sativa ssp. japonica	10	13	CH_osa_192	6	10	0.000000000614912
Oryza sativa ssp. japonica	8	13	CH_osa_279	6	17	0.000000035829
Oryza sativa ssp. japonica	9	13	CH_osa_794	4	13	0.000575576
Oryza sativa ssp. japonica	8	15	CH_osa_58	4	10	0.0000693702
Populus trichocarpa	Chr01	13	CH_ptr_148	7	8	0.00000000000467133
Populus trichocarpa	Chr01	13	CH_ptr_167	7	9	0.0000000000209499
Populus trichocarpa	Chr02	13	CH_ptr_526	5	13	0.0000489848
Populus trichocarpa	Chr17	13	CH_ptr_287	5	5	0.0000000390691
Populus trichocarpa	Chr17	15	CH_ptr_17	4	5	0.0000123371
Setaria italica	scaffold_4	13	CH_sit_117	7	8	0.00000000000237685
Setaria italica	scaffold_9	13	CH_sit_270	5	6	0.000000140189
Setaria italica	scaffold_4	14	CH_sit_66	11	179	0.00000285018
Setaria italica	scaffold_4	15	CH_sit_8	4	4	0.00000267031
Solanum lycopersicum	ch02	13	CH_sly_633	4	5	0.00017879
Solanum lycopersicum	ch02	13	CH_sly_28	13	15	1.6637e-23
Solanum lycopersicum	ch06	13	CH_sly_126	7	7	0.00000000000619343
Solanum lycopersicum	ch09	13	CH_sly_8	17	17	1.25775e-34
Solanum lycopersicum	ch09	13	CH_sly_632	4	5	0.00017879
Solanum lycopersicum	ch10	13	CH_sly_371	5	7	0.00000418068
Solanum lycopersicum	ch02	14	CH_sly_24	13	15	1.6637e-23
Solanum lycopersicum	ch06	14	CH_sly_57	10	47	0.0000000043918
Solanum lycopersicum	ch09	14	CH_sly_8	17	17	1.25775e-34
Solanum lycopersicum	ch09	15	CH_sly_14	7	27	0.000000440603
Sorghum bicolor	chr_10	13	CH_sbi_102	7	8	0.00000000000128172
Sorghum bicolor	chr_10	14	CH_sbi_71	10	200	0.0000682063
Vitis vinifera	chr10	13	CH_vvi_8	21	26	5.74239e-39
Vitis vinifera	chr2	13	CH_vvi_102	9	12	0.0000000000000375276
Vitis vinifera	chr3	13	CH_vvi_61	12	20	3.47074e-18
Vitis vinifera	chr5	13	CH_vvi_20	16	18	3.58975e-30
Vitis vinifera	chr10	14	CH_vvi_9	21	26	5.74239e-39
Vitis vinifera	chr3	14	CH_vvi_43	12	20	3.47074e-18
Vitis vinifera	chr5	14	CH_vvi_20	16	18	3.58975e-30
Vitis vinifera	chr10	15	CH_vvi_18	6	22	0.00000431376
Zea mays	10	13	CH_zma_154	6	18	0.000000187367

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V