Functional clusters
Information
- Type
- InterPro domain
- Identifier
- IPR026082
- Description
- ABC transporter A, ABCA
Cluster overview
Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
---|---|---|---|---|---|---|
Arabidopsis thaliana | 3 | 13 | CH_ath_21 | 7 | 7 | 2.77433e-21 |
Arabidopsis thaliana | 5 | 13 | CH_ath_146 | 4 | 6 | 0.00000000469526 |
Brachypodium distachyon | Bd3 | 13 | CH_bdi_157 | 3 | 3 | 0.00000016898 |
Carica papaya | supercontig_107 | 13 | CH_cpa_286 | 2 | 2 | 0.0000970827 |
Musa acuminata | chr3 | 13 | CH_mac_17 | 5 | 6 | 0.000000000000280997 |
Musa acuminata | chrUn_random | 13 | CH_mac_57 | 4 | 6 | 0.00000000331331 |
Musa acuminata | chrUn_random | 15 | CH_mac_34 | 2 | 2 | 0.000794849 |
Oryza sativa ssp. indica | Chr08 | 13 | CH_osaindica_351 | 3 | 3 | 0.000000109072 |
Oryza sativa ssp. japonica | 8 | 13 | CH_osa_345 | 3 | 5 | 0.00000038192 |
Populus trichocarpa | Chr12 | 13 | CH_ptr_777 | 2 | 2 | 0.000747031 |
Populus trichocarpa | Chr15 | 13 | CH_ptr_776 | 2 | 2 | 0.000747031 |
Setaria italica | scaffold_1 | 13 | CH_sit_297 | 3 | 3 | 0.000000266967 |
Setaria italica | scaffold_6 | 13 | CH_sit_421 | 3 | 7 | 0.00000933884 |
Solanum lycopersicum | ch03 | 13 | CH_sly_171 | 4 | 5 | 0.000000000594868 |
Solanum lycopersicum | ch06 | 13 | CH_sly_92 | 5 | 5 | 0.0000000000000204832 |
Sorghum bicolor | chr_4 | 13 | CH_sbi_288 | 3 | 3 | 0.000000426141 |
Sorghum bicolor | chr_7 | 13 | CH_sbi_202 | 4 | 9 | 0.00000000936138 |
Zea mays | 4 | 13 | CH_zma_190 | 3 | 4 | 0.0000012746 |
Functional clusters experiments
Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
---|---|---|---|---|---|---|---|
1 | GO | Primary GO data only. | 2 | 30 | 80 | 0.001 | X |
2 | GO | Primary and orthology projected GO data. | 2 | 30 | 80 | 0.001 | X |
3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | X |
4 | GO | Primary GO data only. | 10 | 150 | 300 | 0.001 | X |
5 | GO | Primary and orthology projected GO data. | 10 | 150 | 300 | 0.001 | X |
6 | GO | All GO data. | 10 | 150 | 300 | 0.001 | X |
7 | GO | Primary GO data only. | 2 | 30 | 80 | 0.001 | V |
8 | GO | Primary and orthology projected GO data. | 2 | 30 | 80 | 0.001 | V |
9 | GO | All GO data. | 2 | 30 | 80 | 0.001 | V |
10 | GO | Primary GO data only. | 10 | 150 | 300 | 0.001 | V |
11 | GO | Primary and orthology projected GO data. | 10 | 150 | 300 | 0.001 | V |
12 | GO | All GO data. | 10 | 150 | 300 | 0.001 | V |
13 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | X |
14 | InterPro | No filter applied. | 10 | 150 | 300 | 0.001 | X |
15 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | V |
16 | InterPro | No filter applied. | 10 | 150 | 300 | 0.001 | V |
17 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | X |
18 | MapMan | No filter applied. | 10 | 150 | 300 | 0.001 | X |
19 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | V |
20 | MapMan | No filter applied. | 10 | 150 | 300 | 0.001 | V |