PLAZA 3.0 Monocots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Oryza sativa ssp. indica	Chr01	13	CH_osaindica_632	3	3	0.0000510984
Oryza sativa ssp. indica	Chr02	13	CH_osaindica_419	5	22	0.00000114347
Oryza sativa ssp. japonica	1	13	CH_osa_274	4	4	0.0000000313891
Populus trichocarpa	Chr01	13	CH_ptr_646	3	3	0.000261548
Setaria italica	scaffold_1	13	CH_sit_179	5	6	0.00000000106667
Setaria italica	scaffold_2	13	CH_sit_355	4	6	0.00000201057
Solanum lycopersicum	ch04	13	CH_sly_264	4	4	0.000000101068
Sorghum bicolor	chr_5	13	CH_sbi_642	3	5	0.000581369
Vitis vinifera	chr13	13	CH_vvi_23	13	15	3.70171e-28
Vitis vinifera	chr13	14	CH_vvi_24	13	15	3.70171e-28

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V