PLAZA 3.0 Monocots : Functional Clustering

Functional clusters

Information

Type: InterPro domain
Identifier: IPR017972
Description: Cytochrome P450, conserved site

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis thaliana	1	13	CH_ath_203	6	9	0.000000240326
Arabidopsis thaliana	1	13	CH_ath_588	4	6	0.000993687
Arabidopsis thaliana	2	13	CH_ath_332	5	8	0.000024367
Arabidopsis thaliana	3	13	CH_ath_163	6	7	0.000000020255
Arabidopsis thaliana	3	13	CH_ath_480	4	5	0.000332999
Arabidopsis thaliana	3	13	CH_ath_139	7	10	0.00000000224753
Arabidopsis thaliana	3	13	CH_ath_398	4	4	0.0000669557
Arabidopsis thaliana	3	13	CH_ath_13	17	28	4.31735e-26
Arabidopsis thaliana	4	13	CH_ath_399	4	4	0.0000669557
Arabidopsis thaliana	4	13	CH_ath_70	9	14	0.00000000000156708
Arabidopsis thaliana	5	13	CH_ath_237	8	32	0.00000113643
Arabidopsis thaliana	3	14	CH_ath_40	11	106	0.00000530828
Arabidopsis thaliana	3	14	CH_ath_11	17	28	4.31735e-26
Arabidopsis thaliana	4	14	CH_ath_44	11	134	0.0000665299
Brachypodium distachyon	Bd2	13	CH_bdi_16	13	22	7.1728e-18
Brachypodium distachyon	Bd3	13	CH_bdi_440	4	5	0.000598297
Brachypodium distachyon	Bd2	14	CH_bdi_12	13	22	7.1728e-18
Carica papaya	supercontig_21	13	CH_cpa_182	5	11	0.0000250395
Musa acuminata	chr10	13	CH_mac_124	5	7	0.0000010775
Musa acuminata	chr4	13	CH_mac_67	6	8	0.00000000597585
Oryza sativa ssp. indica	Chr01	13	CH_osaindica_474	5	7	0.00000442293
Oryza sativa ssp. indica	Chr01	13	CH_osaindica_123	9	13	0.000000000000102986
Oryza sativa ssp. indica	Chr03	13	CH_osaindica_619	4	4	0.0000410824
Oryza sativa ssp. indica	Chr07	13	CH_osaindica_745	4	5	0.000204558
Oryza sativa ssp. indica	Chr01	14	CH_osaindica_106	13	248	0.0000499562
Oryza sativa ssp. japonica	1	13	CH_osa_561	4	4	0.0000398891
Oryza sativa ssp. japonica	1	13	CH_osa_215	7	11	0.00000000171812
Oryza sativa ssp. japonica	10	13	CH_osa_90	12	33	0.00000000000000550475
Oryza sativa ssp. japonica	2	13	CH_osa_646	6	24	0.000129645
Oryza sativa ssp. japonica	1	14	CH_osa_132	11	190	0.000326266
Oryza sativa ssp. japonica	10	14	CH_osa_62	12	33	0.00000000000000550475
Oryza sativa ssp. japonica	10	15	CH_osa_4	9	33	0.0000000000541715
Populus trichocarpa	Chr01	13	CH_ptr_185	7	7	0.0000000000893762
Populus trichocarpa	Chr02	13	CH_ptr_396	5	5	0.00000139421
Populus trichocarpa	Chr09	13	CH_ptr_385	7	16	0.00000095986
Populus trichocarpa	Chr14	13	CH_ptr_80	10	10	4.48196e-17
Populus trichocarpa	Chr14	14	CH_ptr_65	10	10	4.48196e-17
Populus trichocarpa	Chr14	14	CH_ptr_83	22	228	0.0000000000011105
Setaria italica	scaffold_1	13	CH_sit_581	5	9	0.000167127
Setaria italica	scaffold_4	13	CH_sit_330	6	9	0.000000916667
Setaria italica	scaffold_4	13	CH_sit_255	7	12	0.0000000693897
Setaria italica	scaffold_7	13	CH_sit_580	4	4	0.000166194
Setaria italica	scaffold_9	13	CH_sit_468	5	7	0.0000282394
Setaria italica	scaffold_9	13	CH_sit_259	6	7	0.0000000774713
Setaria italica	scaffold_9	13	CH_sit_166	7	8	0.000000000721261
Solanum lycopersicum	ch02	13	CH_sly_535	4	4	0.0000621361
Solanum lycopersicum	ch03	13	CH_sly_55	10	10	4.0929e-18
Solanum lycopersicum	ch04	13	CH_sly_556	5	10	0.0000979596
Solanum lycopersicum	ch04	13	CH_sly_534	4	4	0.0000621361
Solanum lycopersicum	ch06	13	CH_sly_299	5	5	0.000000399314
Solanum lycopersicum	ch07	13	CH_sly_56	10	10	4.0929e-18
Solanum lycopersicum	ch08	13	CH_sly_40	11	11	2.56026e-20
Solanum lycopersicum	ch09	13	CH_sly_137	7	7	0.0000000000162725
Solanum lycopersicum	ch03	14	CH_sly_38	10	10	4.0929e-18
Solanum lycopersicum	ch07	14	CH_sly_39	10	10	4.0929e-18
Solanum lycopersicum	ch08	14	CH_sly_30	11	11	2.56026e-20
Solanum lycopersicum	ch09	14	CH_sly_59	10	44	0.0000000083579
Sorghum bicolor	chr_10	13	CH_sbi_314	6	9	0.00000128266
Sorghum bicolor	chr_5	14	CH_sbi_65	11	84	0.00000772402
Vitis vinifera	chr13	13	CH_vvi_261	6	8	0.000000161162
Zea mays	1	13	CH_zma_227	5	7	0.00000400384
Zea mays	3	13	CH_zma_145	6	9	0.0000000857744
Zea mays	8	13	CH_zma_228	5	7	0.00000400384

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V