Functional clusters
Information
- Type
- InterPro domain
- Identifier
- IPR017761
- Description
- Laccase
Cluster overview
Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
---|---|---|---|---|---|---|
Brachypodium distachyon | Bd2 | 13 | CH_bdi_212 | 5 | 39 | 0.00000273772 |
Oryza sativa ssp. japonica | 1 | 13 | CH_osa_255 | 6 | 71 | 0.0000000136739 |
Oryza sativa ssp. japonica | 5 | 13 | CH_osa_470 | 3 | 4 | 0.0000117613 |
Populus trichocarpa | Chr05 | 13 | CH_ptr_564 | 3 | 3 | 0.0000871554 |
Populus trichocarpa | Chr06 | 13 | CH_ptr_565 | 3 | 3 | 0.0000871554 |
Populus trichocarpa | Chr15 | 13 | CH_ptr_371 | 4 | 5 | 0.000000542049 |
Populus trichocarpa | Chr16 | 13 | CH_ptr_304 | 7 | 62 | 0.000000086109 |
Populus trichocarpa | Chr19 | 13 | CH_ptr_192 | 5 | 5 | 0.000000000132419 |
Setaria italica | scaffold_5 | 13 | CH_sit_473 | 5 | 60 | 0.0000324182 |
Sorghum bicolor | chr_3 | 13 | CH_sbi_204 | 6 | 49 | 0.0000000111646 |
Zea mays | 3 | 13 | CH_zma_157 | 5 | 41 | 0.000000220317 |
Functional clusters experiments
Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
---|---|---|---|---|---|---|---|
1 | GO | Primary GO data only. | 2 | 30 | 80 | 0.001 | X |
2 | GO | Primary and orthology projected GO data. | 2 | 30 | 80 | 0.001 | X |
3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | X |
4 | GO | Primary GO data only. | 10 | 150 | 300 | 0.001 | X |
5 | GO | Primary and orthology projected GO data. | 10 | 150 | 300 | 0.001 | X |
6 | GO | All GO data. | 10 | 150 | 300 | 0.001 | X |
7 | GO | Primary GO data only. | 2 | 30 | 80 | 0.001 | V |
8 | GO | Primary and orthology projected GO data. | 2 | 30 | 80 | 0.001 | V |
9 | GO | All GO data. | 2 | 30 | 80 | 0.001 | V |
10 | GO | Primary GO data only. | 10 | 150 | 300 | 0.001 | V |
11 | GO | Primary and orthology projected GO data. | 10 | 150 | 300 | 0.001 | V |
12 | GO | All GO data. | 10 | 150 | 300 | 0.001 | V |
13 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | X |
14 | InterPro | No filter applied. | 10 | 150 | 300 | 0.001 | X |
15 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | V |
16 | InterPro | No filter applied. | 10 | 150 | 300 | 0.001 | V |
17 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | X |
18 | MapMan | No filter applied. | 10 | 150 | 300 | 0.001 | X |
19 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | V |
20 | MapMan | No filter applied. | 10 | 150 | 300 | 0.001 | V |