PLAZA 3.0 Monocots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis thaliana	3	14	CH_ath_37	20	133	0.0000000906946
Oryza sativa ssp. japonica	1	13	CH_osa_10	30	52	2.45256e-33
Populus trichocarpa	scaffold_67	13	CH_ptr_623	8	16	0.000166641
Setaria italica	scaffold_5	13	CH_sit_685	5	5	0.000429871
Solanum lycopersicum	ch07	13	CH_sly_477	6	8	0.0000486879
Zea mays	5	13	CH_zma_469	6	9	0.000424771
Zea mays	8	13	CH_zma_35	14	23	0.000000000000235701
Zea mays	8	14	CH_zma_16	14	23	0.000000000000235701
Zea mays	5	15	CH_zma_8	6	9	0.000141496

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V