PLAZA 3.0 Monocots : Functional Clustering

Functional clusters

Type: InterPro domain
Identifier: IPR016196
Description: Major facilitator superfamily domain, general substrate transporter

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Brachypodium distachyon	Bd5	13	CH_bdi_204	5	5	0.00000189817
Brachypodium distachyon	Bd5	15	CH_bdi_14	4	4	0.0000756233
Oryza sativa ssp. indica	Chr09	13	CH_osaindica_270	7	12	0.00000000679847
Oryza sativa ssp. indica	Chr12	13	CH_osaindica_797	6	25	0.000259891
Oryza sativa ssp. japonica	12	13	CH_osa_678	5	13	0.000205789
Oryza sativa ssp. japonica	4	13	CH_osa_664	4	5	0.000167712
Oryza sativa ssp. japonica	6	13	CH_osa_663	4	5	0.000167712
Oryza sativa ssp. japonica	4	15	CH_osa_56	4	5	0.0000524819
Solanum lycopersicum	ch03	13	CH_sly_640	6	20	0.0002463
Sorghum bicolor	chr_6	13	CH_sbi_510	4	4	0.000133588

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V