PLAZA 3.0 Monocots : Functional Clustering

Functional clusters

Information

Type: InterPro domain
Identifier: IPR016140
Description: Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis thaliana	3	13	CH_ath_338	4	5	0.0000336442
Arabidopsis thaliana	4	13	CH_ath_25	13	27	1.22248e-20
Arabidopsis thaliana	5	13	CH_ath_219	5	7	0.000000519843
Arabidopsis thaliana	4	14	CH_ath_18	13	27	1.22248e-20
Arabidopsis thaliana	4	14	CH_ath_24	10	26	0.0000000000000761163
Brachypodium distachyon	Bd1	13	CH_bdi_161	6	12	0.000000216084
Brachypodium distachyon	Bd4	13	CH_bdi_397	5	17	0.000316925
Carica papaya	supercontig_52	13	CH_cpa_367	3	3	0.000331203
Carica papaya	supercontig_58	13	CH_cpa_368	3	3	0.000331203
Carica papaya	supercontig_58	15	CH_cpa_11	3	3	0.0000771383
Oryza sativa ssp. indica	Chr10	13	CH_osaindica_330	5	6	0.0000000495163
Oryza sativa ssp. japonica	10	13	CH_osa_250	6	10	0.0000000106035
Oryza sativa ssp. japonica	5	13	CH_osa_46	15	53	5.32086e-21
Oryza sativa ssp. japonica	5	14	CH_osa_42	15	53	5.32086e-21
Populus trichocarpa	Chr05	13	CH_ptr_754	3	3	0.000717751
Populus trichocarpa	Chr09	13	CH_ptr_500	4	6	0.0000275012
Populus trichocarpa	Chr10	13	CH_ptr_452	4	5	0.00000918597
Setaria italica	scaffold_2	13	CH_sit_461	5	12	0.0000253606
Setaria italica	scaffold_2	13	CH_sit_319	5	7	0.000000683381
Setaria italica	scaffold_2	13	CH_sit_433	5	11	0.0000148415
Setaria italica	scaffold_3	13	CH_sit_482	4	5	0.0000422718
Solanum lycopersicum	ch09	13	CH_sly_364	4	4	0.00000339358
Solanum lycopersicum	ch09	13	CH_sly_210	5	5	0.0000000104175
Sorghum bicolor	chr_2	13	CH_sbi_377	5	11	0.00000742755
Vitis vinifera	chr13_random	13	CH_vvi_515	3	3	0.000156333
Vitis vinifera	chr16	13	CH_vvi_577	5	40	0.000286605
Vitis vinifera	chr2	13	CH_vvi_92	10	43	0.00000000000000822947
Vitis vinifera	chr5	13	CH_vvi_514	3	3	0.000156333
Vitis vinifera	chr2	14	CH_vvi_51	10	43	0.00000000000000822947
Zea mays	1	13	CH_zma_557	3	3	0.000986927

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V