PLAZA 3.0 Monocots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Carica papaya	supercontig_14	13	CH_cpa_335	2	2	0.000291248
Oryza sativa ssp. indica	Chr04	13	CH_osaindica_952	2	2	0.000756716
Oryza sativa ssp. japonica	4	13	CH_osa_741	2	2	0.000356818
Populus trichocarpa	Chr17	13	CH_ptr_343	3	3	0.000000312518
Setaria italica	scaffold_7	13	CH_sit_69	6	8	1.65726e-16
Solanum lycopersicum	ch02	13	CH_sly_46	6	6	3.91778e-19
Sorghum bicolor	chr_4	13	CH_sbi_491	3	7	0.0000645619
Sorghum bicolor	chr_6	13	CH_sbi_101	5	6	0.00000000000103035
Zea mays	2	13	CH_zma_199	3	5	0.00000212412

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V