PLAZA 3.0 Monocots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Brachypodium distachyon	Bd3	13	CH_bdi_7	12	18	1.09926e-22
Brachypodium distachyon	Bd3	14	CH_bdi_6	12	18	1.09926e-22
Oryza sativa ssp. indica	Chr10	13	CH_osaindica_49	10	17	2.63187e-20
Oryza sativa ssp. indica	Chr10	14	CH_osaindica_44	10	17	2.63187e-20
Oryza sativa ssp. japonica	10	13	CH_osa_187	6	13	0.000000000484605
Populus trichocarpa	Chr14	13	CH_ptr_547	4	10	0.0000628861
Setaria italica	scaffold_9	13	CH_sit_6	18	26	3.53432e-36
Setaria italica	scaffold_9	14	CH_sit_6	18	26	3.53432e-36
Setaria italica	scaffold_9	14	CH_sit_28	10	11	1.29159e-20
Solanum lycopersicum	ch01	13	CH_sly_569	3	3	0.000136876
Sorghum bicolor	chr_1	13	CH_sbi_30	11	15	5.2052e-21
Sorghum bicolor	chr_6	13	CH_sbi_709	3	3	0.000923834
Sorghum bicolor	chr_1	14	CH_sbi_29	11	15	5.2052e-21
Vitis vinifera	chr15	13	CH_vvi_170	5	5	0.000000000688826

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V