PLAZA 3.0 Monocots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Brachypodium distachyon	Bd3	13	CH_bdi_20	8	8	5.13872e-16
Brachypodium distachyon	Bd3	14	CH_bdi_16	11	80	0.000000000147889
Chlamydomonas reinhardtii	chromosome_4	13	CH_cre_167	6	63	0.00070791
Chlamydomonas reinhardtii	chromosome_4	14	CH_cre_9	11	181	0.000000132482
Oryza sativa ssp. indica	Chr08	13	CH_osaindica_106	13	80	0.0000000000000223425
Oryza sativa ssp. indica	Chr11	13	CH_osaindica_535	6	28	0.0000160226
Oryza sativa ssp. indica	Chr08	14	CH_osaindica_64	13	80	0.0000000000000223425
Oryza sativa ssp. japonica	2	13	CH_osa_438	5	12	0.00000506636
Oryza sativa ssp. japonica	8	13	CH_osa_106	8	13	0.000000000000131583
Oryza sativa ssp. japonica	8	14	CH_osa_86	10	80	0.00000000088857
Setaria italica	scaffold_3	13	CH_sit_739	4	8	0.000586289
Setaria italica	scaffold_6	13	CH_sit_86	10	22	0.0000000000000156414
Setaria italica	scaffold_6	13	CH_sit_21	12	14	3.08271e-23
Setaria italica	scaffold_9	13	CH_sit_644	4	7	0.000294061
Setaria italica	scaffold_9	13	CH_sit_72	8	8	0.00000000000000180538
Setaria italica	scaffold_6	14	CH_sit_43	10	22	0.0000000000000156414
Setaria italica	scaffold_6	14	CH_sit_23	12	14	3.08271e-23
Sorghum bicolor	chr_1	13	CH_sbi_85	13	65	0.0000000000000409391
Sorghum bicolor	chr_10	13	CH_sbi_80	8	9	0.0000000000000225937
Sorghum bicolor	chr_7	13	CH_sbi_17	14	15	1.23299e-28
Sorghum bicolor	chr_1	14	CH_sbi_43	13	65	0.0000000000000409391
Sorghum bicolor	chr_7	14	CH_sbi_17	14	15	1.23299e-28
Zea mays	1	13	CH_zma_165	4	4	0.00000032992

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V