PLAZA 3.0 Monocots : Functional Clustering

Functional clusters

Information

Type: InterPro domain
Identifier: IPR009003
Description: Trypsin-like cysteine/serine peptidase domain

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Brachypodium distachyon	Bd2	13	CH_bdi_241	6	53	0.00000818505
Brachypodium distachyon	Bd4	13	CH_bdi_331	3	3	0.000111899
Brachypodium distachyon	Bd4	13	CH_bdi_407	5	47	0.000376054
Brachypodium distachyon	Bd4	13	CH_bdi_414	3	4	0.000447061
Brachypodium distachyon	Bd4	15	CH_bdi_20	3	4	0.00024107
Oryza sativa ssp. indica	Chr03	13	CH_osaindica_783	5	51	0.000217273
Oryza sativa ssp. indica	Chr05	13	CH_osaindica_107	10	54	0.0000000000000270536
Oryza sativa ssp. indica	Chr05	13	CH_osaindica_261	6	21	0.00000000548653
Oryza sativa ssp. indica	Chr07	13	CH_osaindica_547	4	10	0.0000186309
Oryza sativa ssp. indica	Chr09	13	CH_osaindica_652	3	3	0.0000811497
Oryza sativa ssp. indica	Chr05	14	CH_osaindica_57	14	163	4.67679e-18
Oryza sativa ssp. japonica	5	13	CH_osa_332	5	16	0.000000241208
Oryza sativa ssp. japonica	5	13	CH_osa_172	8	60	0.000000000109093
Oryza sativa ssp. japonica	7	13	CH_osa_449	4	9	0.00000725745
Oryza sativa ssp. japonica	8	13	CH_osa_564	5	41	0.0000405574
Oryza sativa ssp. japonica	9	13	CH_osa_102	6	6	0.0000000000000526846
Oryza sativa ssp. japonica	5	14	CH_osa_57	13	180	3.8634e-16
Oryza sativa ssp. japonica	3	15	CH_osa_90	3	6	0.000348554
Oryza sativa ssp. japonica	9	15	CH_osa_18	4	5	0.0000000560236
Populus trichocarpa	Chr18	13	CH_ptr_175	5	7	0.0000000000411528
Populus trichocarpa	Chr18	15	CH_ptr_8	4	7	0.0000000775449
Setaria italica	scaffold_2	13	CH_sit_176	7	24	0.00000000102138
Setaria italica	scaffold_5	13	CH_sit_413	7	79	0.00000784088
Setaria italica	scaffold_6	13	CH_sit_526	4	9	0.0000616314
Setaria italica	scaffold_7	13	CH_sit_527	4	9	0.0000616314
Sorghum bicolor	chr_1	13	CH_sbi_683	3	5	0.000718514
Sorghum bicolor	chr_3	13	CH_sbi_275	7	79	0.000000373121
Sorghum bicolor	chr_6	13	CH_sbi_423	4	11	0.0000288145
Sorghum bicolor	chr_1	15	CH_sbi_20	3	5	0.000303147

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V