PLAZA 3.0 Monocots : Functional Clustering

Functional clusters

Type: InterPro domain
Identifier: IPR008930
Description: Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Carica papaya	supercontig_155	13	CH_cpa_191	3	3	0.000032518
Musa acuminata	chrUn_random	13	CH_mac_48	5	6	0.000000000676
Oryza sativa ssp. indica	Chr11	13	CH_osaindica_65	10	23	1.53731e-18
Oryza sativa ssp. indica	Chr11	13	CH_osaindica_729	3	3	0.000166179
Oryza sativa ssp. indica	Chr11	14	CH_osaindica_53	10	23	1.53731e-18
Oryza sativa ssp. japonica	11	13	CH_osa_641	4	14	0.000116836
Oryza sativa ssp. japonica	12	13	CH_osa_760	3	4	0.000399892
Setaria italica	scaffold_1	13	CH_sit_145	6	9	0.0000000000595281
Sorghum bicolor	chr_8	13	CH_sbi_586	3	3	0.000277702
Vitis vinifera	chr10	13	CH_vvi_31	14	18	3.36153e-25
Vitis vinifera	chr10_random	13	CH_vvi_370	5	8	0.00000477833
Vitis vinifera	chr4	13	CH_vvi_412	4	4	0.000017403
Vitis vinifera	chr9	13	CH_vvi_3	30	46	1.45233e-54
Vitis vinifera	chr10	14	CH_vvi_31	14	18	3.36153e-25
Vitis vinifera	chr9	14	CH_vvi_3	30	46	1.45233e-54
Zea mays	10	14	CH_zma_22	11	242	0.000000000811158

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V