PLAZA 3.0 Monocots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis thaliana	2	13	CH_ath_174	4	4	0.0000000372655
Carica papaya	supercontig_8	13	CH_cpa_61	4	4	0.00000000374751
Oryza sativa ssp. indica	Chr01	13	CH_osaindica_624	3	7	0.0000463173
Oryza sativa ssp. indica	Chr07	13	CH_osaindica_784	3	11	0.000218172
Oryza sativa ssp. japonica	7	13	CH_osa_727	3	13	0.00030529
Populus trichocarpa	Chr01	13	CH_ptr_788	3	9	0.000810335
Populus trichocarpa	Chr17	13	CH_ptr_571	3	5	0.000096644
Populus trichocarpa	Chr17	13	CH_ptr_336	5	27	0.000000242572
Populus trichocarpa	Chr18	13	CH_ptr_518	3	4	0.0000386752

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V