PLAZA 3.0 Monocots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis thaliana	1	13	CH_ath_463	4	8	0.000209637
Arabidopsis thaliana	2	13	CH_ath_589	3	3	0.000996191
Arabidopsis thaliana	5	13	CH_ath_1	28	32	1.64689e-63
Arabidopsis thaliana	5	13	CH_ath_90	7	11	0.0000000000260401
Arabidopsis thaliana	5	14	CH_ath_1	28	32	1.64689e-63
Carica papaya	supercontig_34	13	CH_cpa_30	5	5	0.00000000000291097
Populus trichocarpa	Chr04	13	CH_ptr_22	13	20	1.48174e-31
Populus trichocarpa	scaffold_27	13	CH_ptr_106	8	25	0.0000000000000125191
Populus trichocarpa	Chr04	14	CH_ptr_23	13	20	1.48174e-31
Solanum lycopersicum	ch05	13	CH_sly_317	4	16	0.000000735284

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V