PLAZA 3.0 Monocots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Brachypodium distachyon	Bd1	13	CH_bdi_268	4	4	0.00002001
Brachypodium distachyon	Bd1	13	CH_bdi_327	4	5	0.0000996347
Carica papaya	supercontig_235	13	CH_cpa_189	5	12	0.0000298007
Oryza sativa ssp. indica	Chr09	13	CH_osaindica_724	5	19	0.000153708
Oryza sativa ssp. indica	Chr09	14	CH_osaindica_112	10	239	0.000220172
Oryza sativa ssp. japonica	9	13	CH_osa_676	7	76	0.000189043
Setaria italica	scaffold_2	13	CH_sit_539	4	5	0.0000759001
Setaria italica	scaffold_9	13	CH_sit_253	5	5	0.000000068286
Solanum lycopersicum	ch02	13	CH_sly_187	6	7	0.00000000214784
Sorghum bicolor	chr_2	13	CH_sbi_148	6	6	0.000000000251312
Zea mays	7	13	CH_zma_291	4	4	0.0000389699

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V