PLAZA 3.0 Monocots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Oryza sativa ssp. indica	Chr01	13	CH_osaindica_666	3	4	0.000103123
Oryza sativa ssp. indica	Chr01	15	CH_osaindica_39	3	4	0.0000656915
Oryza sativa ssp. japonica	11	13	CH_osa_257	4	4	0.0000000138027
Oryza sativa ssp. japonica	11	15	CH_osa_46	3	3	0.0000148393
Setaria italica	scaffold_8	13	CH_sit_470	3	3	0.0000285273
Solanum lycopersicum	ch04	13	CH_sly_391	4	8	0.00000588692
Sorghum bicolor	chr_5	13	CH_sbi_266	5	15	0.000000217156
Sorghum bicolor	chr_5	13	CH_sbi_487	3	3	0.0000582393
Zea mays	4	13	CH_zma_337	3	3	0.0000615193

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V