PLAZA 3.0 Monocots : Functional Clustering

Functional clusters

Type: InterPro domain
Identifier: IPR006139
Description: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Brachypodium distachyon	Bd5	13	CH_bdi_57	5	7	0.00000000000999912
Chlamydomonas reinhardtii	chromosome_7	13	CH_cre_54	3	5	0.00000382221
Oryza sativa ssp. indica	Chr04	13	CH_osaindica_144	5	9	0.00000000000126137
Oryza sativa ssp. japonica	4	13	CH_osa_254	4	8	0.000000013014
Setaria italica	scaffold_7	13	CH_sit_456	4	33	0.0000218565
Solanum lycopersicum	ch03	13	CH_sly_341	3	3	0.00000179736
Sorghum bicolor	chr_6	13	CH_sbi_114	5	7	0.00000000000786544
Zea mays	10	13	CH_zma_149	4	8	0.00000012925

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V