PLAZA 3.0 Monocots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Brachypodium distachyon	Bd1	13	CH_bdi_207	4	4	0.0000021101
Brachypodium distachyon	Bd5	13	CH_bdi_153	5	7	0.000000127433
Carica papaya	supercontig_34	13	CH_cpa_311	3	3	0.000200622
Musa acuminata	chr4	13	CH_mac_259	5	25	0.0000880962
Oryza sativa ssp. indica	Chr04	13	CH_osaindica_160	6	7	0.0000000000136633
Oryza sativa ssp. japonica	2	13	CH_osa_517	4	8	0.0000277132
Populus trichocarpa	Chr05	13	CH_ptr_789	3	3	0.000847967
Setaria italica	scaffold_1	13	CH_sit_379	4	4	0.0000028807
Setaria italica	scaffold_8	13	CH_sit_68	10	19	1.42651e-16
Setaria italica	scaffold_9	13	CH_sit_778	3	3	0.000973267
Setaria italica	scaffold_8	14	CH_sit_38	10	19	1.42651e-16
Solanum lycopersicum	ch02	13	CH_sly_367	4	5	0.00000362879
Solanum lycopersicum	ch10	13	CH_sly_694	3	3	0.000347128
Sorghum bicolor	chr_2	13	CH_sbi_193	5	5	0.00000000582662
Sorghum bicolor	chr_9	13	CH_sbi_337	4	4	0.00000213155
Vitis vinifera	chr14	13	CH_vvi_21	13	14	4.58189e-30
Vitis vinifera	chr14	14	CH_vvi_21	13	14	4.58189e-30
Zea mays	2	13	CH_zma_237	4	5	0.0000065989
Zea mays	2	13	CH_zma_270	4	6	0.0000197592

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V