PLAZA 3.0 Monocots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Brachypodium distachyon	Bd4	13	CH_bdi_38	7	10	0.000000000000123884
Carica papaya	supercontig_81	13	CH_cpa_26	6	6	0.000000000000633386
Oryza sativa ssp. indica	Chr11	13	CH_osaindica_553	5	34	0.0000204193
Oryza sativa ssp. indica	Chr11	13	CH_osaindica_300	5	10	0.0000000188778
Oryza sativa ssp. japonica	11	13	CH_osa_167	5	5	0.000000000066406
Populus trichocarpa	Chr01	13	CH_ptr_239	5	5	0.0000000040395
Populus trichocarpa	Chr09	13	CH_ptr_303	5	7	0.0000000844805
Populus trichocarpa	Chr10	13	CH_ptr_277	5	6	0.0000000241871
Populus trichocarpa	Chr16	13	CH_ptr_366	6	21	0.000000518397
Populus trichocarpa	Chr17	13	CH_ptr_712	5	29	0.000456571
Populus trichocarpa	Chr16	15	CH_ptr_19	5	21	0.000028226
Setaria italica	scaffold_3	13	CH_sit_567	3	3	0.00013949
Setaria italica	scaffold_7	13	CH_sit_569	3	3	0.00013949
Setaria italica	scaffold_8	13	CH_sit_568	3	3	0.00013949
Sorghum bicolor	chr_1	13	CH_sbi_593	3	3	0.000328859
Sorghum bicolor	chr_5	13	CH_sbi_165	5	5	0.0000000013821
Sorghum bicolor	chr_5	13	CH_sbi_7	15	18	5.99795e-34
Sorghum bicolor	chr_9	13	CH_sbi_592	3	3	0.000328859
Sorghum bicolor	chr_5	14	CH_sbi_8	15	18	5.99795e-34
Vitis vinifera	chr13	13	CH_vvi_259	4	4	0.000000157528
Vitis vinifera	chr6	13	CH_vvi_311	4	5	0.000000786686
Zea mays	4	13	CH_zma_48	6	6	0.00000000000340419
Zea mays	4	14	CH_zma_20	10	82	0.0000000000974149

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V