PLAZA 3.0 Monocots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis thaliana	1	13	CH_ath_220	5	7	0.000000607657
Arabidopsis thaliana	2	13	CH_ath_93	7	10	0.0000000000490523
Arabidopsis thaliana	3	13	CH_ath_344	4	7	0.0000381025
Arabidopsis thaliana	3	13	CH_ath_192	5	6	0.00000017417
Arabidopsis thaliana	4	13	CH_ath_271	8	59	0.00000287622
Arabidopsis thaliana	5	13	CH_ath_345	4	5	0.0000381025
Arabidopsis thaliana	5	13	CH_ath_297	4	4	0.00000764402
Arabidopsis thaliana	4	14	CH_ath_43	10	157	0.0000237862
Carica papaya	supercontig_89	13	CH_cpa_17	7	13	3.87775e-16
Carica papaya	supercontig_189	15	CH_cpa_34	2	2	0.000582496
Setaria italica	scaffold_6	13	CH_sit_597	2	2	0.000169124

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V