PLAZA 3.0 Monocots : Functional Clustering

Functional clusters

Information

Type: InterPro domain
Identifier: IPR002401
Description: Cytochrome P450, E-class, group I

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis thaliana	3	13	CH_ath_69	8	9	0.00000000000123706
Arabidopsis thaliana	4	15	CH_ath_6	5	10	0.0000104494
Brachypodium distachyon	Bd5	13	CH_bdi_65	8	10	0.0000000000279171
Carica papaya	supercontig_189	13	CH_cpa_177	4	4	0.0000210679
Chlamydomonas reinhardtii	chromosome_7	13	CH_cre_87	3	3	0.0000626309
Chlamydomonas reinhardtii	chromosome_9	13	CH_cre_52	5	21	0.00000239308
Chlamydomonas reinhardtii	chromosome_7	15	CH_cre_13	3	3	0.000049707
Chlamydomonas reinhardtii	chromosome_9	15	CH_cre_22	3	4	0.000198623
Musa acuminata	chr5	13	CH_mac_327	5	14	0.000170211
Oryza sativa ssp. indica	Chr01	13	CH_osaindica_158	7	7	0.0000000000105276
Oryza sativa ssp. indica	Chr02	13	CH_osaindica_638	4	4	0.0000586892
Oryza sativa ssp. indica	Chr02	13	CH_osaindica_849	5	13	0.000411481
Oryza sativa ssp. indica	Chr03	13	CH_osaindica_545	5	8	0.0000183325
Oryza sativa ssp. indica	Chr07	13	CH_osaindica_458	6	13	0.00000310624
Oryza sativa ssp. indica	Chr08	13	CH_osaindica_290	6	7	0.0000000130451
Oryza sativa ssp. japonica	2	13	CH_osa_572	4	4	0.000052108
Oryza sativa ssp. japonica	3	13	CH_osa_403	5	6	0.00000170469
Oryza sativa ssp. japonica	3	13	CH_osa_571	4	4	0.000052108
Oryza sativa ssp. japonica	2	15	CH_osa_42	4	4	0.00000812686
Populus trichocarpa	Chr02	13	CH_ptr_638	4	4	0.000217486
Populus trichocarpa	Chr05	13	CH_ptr_709	5	10	0.00045044
Populus trichocarpa	Chr06	13	CH_ptr_408	5	5	0.00000185228
Populus trichocarpa	Chr08	13	CH_ptr_626	6	17	0.000179642
Setaria italica	scaffold_2	13	CH_sit_266	6	7	0.000000108686
Setaria italica	scaffold_5	13	CH_sit_29	12	12	6.13893e-21
Setaria italica	scaffold_9	13	CH_sit_269	11	58	0.000000113976
Setaria italica	scaffold_5	14	CH_sit_27	12	12	6.13893e-21
Setaria italica	scaffold_9	14	CH_sit_54	14	116	0.0000000791897
Solanum lycopersicum	ch01	13	CH_sly_406	5	7	0.00000986822
Sorghum bicolor	chr_1	13	CH_sbi_161	7	8	0.000000000978529
Sorghum bicolor	chr_1	13	CH_sbi_574	4	4	0.000195195
Sorghum bicolor	chr_2	13	CH_sbi_573	4	4	0.000195195
Sorghum bicolor	chr_2	13	CH_sbi_572	4	4	0.000195195
Sorghum bicolor	chr_3	13	CH_sbi_184	7	9	0.00000000437043
Sorghum bicolor	chr_3	13	CH_sbi_23	15	19	1.16952e-23
Sorghum bicolor	chr_1	14	CH_sbi_52	20	242	0.00000000180339
Sorghum bicolor	chr_3	14	CH_sbi_24	15	19	1.16952e-23
Vitis vinifera	chr1	13	CH_vvi_571	4	4	0.000264264
Vitis vinifera	chr15	13	CH_vvi_87	11	15	0.00000000000000297752
Vitis vinifera	chr15	13	CH_vvi_572	4	4	0.000264264
Vitis vinifera	chr18	13	CH_vvi_573	4	4	0.000264264
Vitis vinifera	chr18	13	CH_vvi_76	12	17	1.28824e-16
Vitis vinifera	chr18	13	CH_vvi_304	6	8	0.000000709078
Vitis vinifera	chr7	13	CH_vvi_59	12	14	1.94592e-18
Vitis vinifera	chr8	13	CH_vvi_179	7	8	0.00000000200549
Vitis vinifera	chr8	13	CH_vvi_570	4	4	0.000264264
Vitis vinifera	chr15	14	CH_vvi_49	11	15	0.00000000000000297752
Vitis vinifera	chr18	14	CH_vvi_46	12	17	1.28824e-16
Vitis vinifera	chr7	14	CH_vvi_42	12	14	1.94592e-18
Vitis vinifera	chr15	15	CH_vvi_42	5	12	0.00018133
Vitis vinifera	chr18	15	CH_vvi_21	6	17	0.000016791
Vitis vinifera	chr7	15	CH_vvi_2	8	13	0.0000000000647982
Vitis vinifera	chr8	15	CH_vvi_5	6	7	0.0000000100048
Vitis vinifera	chr18	16	CH_vvi_4	12	237	0.000910072

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V