PLAZA 3.0 Monocots : Functional Clustering

Functional clusters

Type: InterPro domain
Identifier: IPR002290
Description: Serine/threonine- / dual specificity protein kinase, catalytic domain

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Brachypodium distachyon	Bd5	13	CH_bdi_491	7	12	0.000982995
Carica papaya	supercontig_44	13	CH_cpa_199	5	5	0.0000683599
Oryza sativa ssp. indica	Chr10	13	CH_osaindica_347	13	38	0.000000100047
Oryza sativa ssp. indica	Chr10	14	CH_osaindica_89	13	38	0.000000100047
Oryza sativa ssp. indica	Chr10	15	CH_osaindica_54	8	25	0.000167299
Oryza sativa ssp. japonica	10	13	CH_osa_763	10	38	0.000411717
Oryza sativa ssp. japonica	4	13	CH_osa_668	6	8	0.00017584
Oryza sativa ssp. japonica	1	14	CH_osa_11	32	52	3.46454e-35
Oryza sativa ssp. japonica	10	14	CH_osa_135	10	38	0.000411717
Oryza sativa ssp. japonica	11	15	CH_osa_76	10	49	0.00014385
Oryza sativa ssp. japonica	11	16	CH_osa_34	10	49	0.00014385
Sorghum bicolor	chr_3	14	CH_sbi_72	21	164	0.0000748252

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V