PLAZA 3.0 Monocots : Functional Clustering

Functional clusters

Information

Type: InterPro domain
Identifier: IPR002198
Description: Short-chain dehydrogenase/reductase SDR

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis thaliana	2	13	CH_ath_23	12	25	6.98416e-21
Arabidopsis thaliana	2	14	CH_ath_16	12	25	6.98416e-21
Brachypodium distachyon	Bd4	13	CH_bdi_61	6	6	0.0000000000187655
Brachypodium distachyon	Bd5	13	CH_bdi_72	6	7	0.000000000131032
Carica papaya	supercontig_81	13	CH_cpa_312	3	3	0.000229252
Oryza sativa ssp. indica	Chr04	13	CH_osaindica_456	4	5	0.00000286162
Oryza sativa ssp. indica	Chr06	13	CH_osaindica_489	5	17	0.00000609081
Oryza sativa ssp. japonica	4	13	CH_osa_335	5	10	0.000000266258
Oryza sativa ssp. japonica	6	13	CH_osa_200	6	11	0.000000000853415
Populus trichocarpa	Chr03	13	CH_ptr_782	3	3	0.000759554
Populus trichocarpa	Chr04	13	CH_ptr_783	3	3	0.000759554
Populus trichocarpa	Chr06	13	CH_ptr_201	6	8	0.000000000367799
Populus trichocarpa	Chr10	13	CH_ptr_781	3	3	0.000759554
Populus trichocarpa	Chr15	13	CH_ptr_780	3	3	0.000759554
Populus trichocarpa	Chr16	13	CH_ptr_410	4	4	0.00000198603
Setaria italica	scaffold_1	13	CH_sit_748	3	3	0.000702886
Setaria italica	scaffold_2	13	CH_sit_746	3	3	0.000702886
Setaria italica	scaffold_2	13	CH_sit_747	3	3	0.000702886
Setaria italica	scaffold_7	13	CH_sit_749	3	3	0.000702886
Setaria italica	scaffold_8	13	CH_sit_205	6	11	0.00000000578567
Solanum lycopersicum	ch03	13	CH_sly_411	4	5	0.0000102119
Solanum lycopersicum	ch03	13	CH_sly_771	3	3	0.00075102
Solanum lycopersicum	ch06	13	CH_sly_772	3	3	0.00075102
Solanum lycopersicum	ch12	13	CH_sly_817	4	12	0.000995608
Sorghum bicolor	chr_2	13	CH_sbi_194	5	5	0.00000000613655
Sorghum bicolor	chr_5	13	CH_sbi_105	7	9	0.00000000000162555
Sorghum bicolor	chr_6	13	CH_sbi_123	6	6	0.0000000000167748
Vitis vinifera	chr1	13	CH_vvi_435	4	6	0.0000465073
Vitis vinifera	chr15	13	CH_vvi_133	7	10	0.0000000000116954
Vitis vinifera	chr8	13	CH_vvi_699	3	3	0.000963621
Vitis vinifera	chr8	15	CH_vvi_38	3	3	0.000137589
Zea mays	2	13	CH_zma_460	3	3	0.000311713

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V