PLAZA 3.0 Monocots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis thaliana	5	13	CH_ath_318	5	13	0.00001452
Chlamydomonas reinhardtii	chromosome_8	13	CH_cre_56	5	6	0.00000415284
Oryza sativa ssp. indica	Chr03	13	CH_osaindica_146	7	8	0.00000000000160651
Oryza sativa ssp. indica	Chr09	13	CH_osaindica_291	6	10	0.0000000131894
Oryza sativa ssp. indica	Chr11	13	CH_osaindica_97	9	14	0.00000000000000392989
Oryza sativa ssp. indica	Chr11	13	CH_osaindica_661	4	6	0.000092639
Oryza sativa ssp. indica	Chr11	14	CH_osaindica_93	10	128	0.0000010072
Oryza sativa ssp. japonica	2	13	CH_osa_154	8	18	0.0000000000210571
Populus trichocarpa	Chr18	13	CH_ptr_197	12	73	0.000000000225087
Populus trichocarpa	Chr19	13	CH_ptr_44	15	26	1.52422e-23
Populus trichocarpa	Chr18	14	CH_ptr_86	12	73	0.000000000225087
Setaria italica	scaffold_3	13	CH_sit_210	6	9	0.0000000073125
Setaria italica	scaffold_3	14	CH_sit_81	11	297	0.000632056
Sorghum bicolor	chr_8	13	CH_sbi_81	9	15	0.0000000000000231108
Sorghum bicolor	chr_8	14	CH_sbi_76	10	210	0.000324515
Vitis vinifera	chr11	13	CH_vvi_205	7	13	0.0000000131888

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V