PLAZA 3.0 Monocots : Functional Clustering

Functional clusters

Type: InterPro domain
Identifier: IPR001926
Description: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Carica papaya	supercontig_117	13	CH_cpa_32	5	5	0.00000000000570997
Oryza sativa ssp. indica	Chr06	13	CH_osaindica_136	5	5	0.000000000000333027
Oryza sativa ssp. japonica	6	13	CH_osa_138	5	7	0.0000000000067204
Populus trichocarpa	Chr05	13	CH_ptr_101	6	7	0.0000000000000064935
Setaria italica	scaffold_4	13	CH_sit_221	4	5	0.0000000104136
Sorghum bicolor	chr_10	13	CH_sbi_372	4	18	0.00000696179
Vitis vinifera	chr14	13	CH_vvi_56	8	12	6.77908e-19
Zea mays	9	13	CH_zma_281	4	18	0.0000275318

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V