PLAZA 3.0 Monocots : Functional Clustering

Functional clusters

Information

Type: InterPro domain
Identifier: IPR001878
Description: Zinc finger, CCHC-type

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Oryza sativa ssp. japonica	10	13	CH_osa_373	14	33	0.000000884498
Oryza sativa ssp. japonica	10	13	CH_osa_516	19	80	0.0000272728
Oryza sativa ssp. japonica	12	13	CH_osa_484	11	22	0.0000151125
Oryza sativa ssp. japonica	3	13	CH_osa_256	14	26	0.0000000137069
Oryza sativa ssp. japonica	4	13	CH_osa_770	17	75	0.000473892
Oryza sativa ssp. japonica	4	13	CH_osa_428	16	49	0.00000349676
Oryza sativa ssp. japonica	4	13	CH_osa_735	13	41	0.000328205
Oryza sativa ssp. japonica	5	13	CH_osa_69	30	78	7.0128e-17
Oryza sativa ssp. japonica	5	13	CH_osa_191	23	73	0.000000000571729
Oryza sativa ssp. japonica	5	13	CH_osa_659	18	79	0.000159069
Oryza sativa ssp. japonica	7	13	CH_osa_837	13	44	0.000861075
Oryza sativa ssp. japonica	8	13	CH_osa_660	18	79	0.000159069
Oryza sativa ssp. japonica	10	14	CH_osa_89	43	278	0.00000000587546
Oryza sativa ssp. japonica	3	14	CH_osa_93	14	26	0.0000000137069
Oryza sativa ssp. japonica	4	14	CH_osa_74	51	298	0.000000000000411051
Oryza sativa ssp. japonica	4	14	CH_osa_122	39	299	0.0000156518
Oryza sativa ssp. japonica	5	14	CH_osa_17	72	293	2.7781e-30
Oryza sativa ssp. japonica	7	14	CH_osa_94	35	199	0.0000000246522
Oryza sativa ssp. japonica	10	15	CH_osa_24	14	33	0.000000752466
Oryza sativa ssp. japonica	10	15	CH_osa_50	19	80	0.0000222803
Oryza sativa ssp. japonica	12	15	CH_osa_44	11	22	0.0000132844
Oryza sativa ssp. japonica	3	15	CH_osa_15	14	26	0.0000000116215
Oryza sativa ssp. japonica	4	15	CH_osa_34	16	49	0.00000292286
Oryza sativa ssp. japonica	5	15	CH_osa_74	18	79	0.000131539
Oryza sativa ssp. japonica	5	15	CH_osa_1	30	78	4.97525e-17
Oryza sativa ssp. japonica	5	15	CH_osa_7	23	73	0.000000000442424
Oryza sativa ssp. japonica	7	15	CH_osa_102	13	44	0.000745777
Oryza sativa ssp. japonica	8	15	CH_osa_75	18	79	0.000131539
Oryza sativa ssp. japonica	10	16	CH_osa_15	42	278	0.0000000170903
Oryza sativa ssp. japonica	10	16	CH_osa_35	37	300	0.00015201
Oryza sativa ssp. japonica	3	16	CH_osa_14	14	26	0.0000000116215
Oryza sativa ssp. japonica	4	16	CH_osa_32	37	299	0.000138658
Oryza sativa ssp. japonica	4	16	CH_osa_4	50	298	0.00000000000124826
Oryza sativa ssp. japonica	5	16	CH_osa_1	72	293	1.278e-30
Oryza sativa ssp. japonica	7	16	CH_osa_16	35	199	0.0000000174323

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V